Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G211000.1 | Wheat | cytosol | 78.57 | 97.38 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 78.04 | 96.72 |
| Os02t0209900-01 | Rice | cytosol | 64.02 | 77.81 |
| EES06503 | Sorghum | cytosol | 64.29 | 77.14 |
| Zm00001d053607_P001 | Maize | cytosol | 63.76 | 77.0 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 58.2 | 71.9 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 47.09 | 70.08 |
| GSMUA_Achr10P... | Banana | cytosol | 51.06 | 69.18 |
| KRH41917 | Soybean | cytosol | 55.29 | 68.75 |
| KRH21567 | Soybean | cytosol | 55.29 | 68.75 |
| KRH10761 | Soybean | cytosol | 55.03 | 68.42 |
| Bra031761.1-P | Field mustard | cytosol | 29.63 | 67.88 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 55.29 | 67.86 |
| CDY34843 | Canola | cytosol | 53.17 | 67.45 |
| AT1G11250.1 | Thale cress | cytosol | 53.17 | 67.45 |
| CDY34656 | Canola | cytosol | 52.91 | 67.11 |
| Bra031759.1-P | Field mustard | cytosol | 52.91 | 67.11 |
| CDY20986 | Canola | cytosol | 52.65 | 66.78 |
| Bra016846.1-P | Field mustard | cytosol | 52.38 | 66.44 |
| CDY70107 | Canola | cytosol | 52.12 | 66.11 |
| AT1G61290.2 | Thale cress | cytosol | 52.91 | 66.01 |
| CDY21958 | Canola | cytosol | 53.17 | 65.9 |
| CDY48554 | Canola | cytosol | 53.17 | 65.9 |
| Bra034202.1-P | Field mustard | cytosol | 53.17 | 65.9 |
| CDY19350 | Canola | cytosol | 51.85 | 65.77 |
| CDX97943 | Canola | cytosol | 51.85 | 65.77 |
| Bra019872.1-P | Field mustard | cytosol | 51.85 | 65.77 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 52.65 | 65.25 |
| AT4G03330.1 | Thale cress | cytosol | 52.65 | 65.25 |
| PGSC0003DMT400035739 | Potato | cytosol | 52.91 | 64.52 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 17.72 | 64.42 |
| Solyc12g005580.1.1 | Tomato | cytosol | 52.65 | 64.19 |
| PGSC0003DMT400055777 | Potato | cytosol | 51.59 | 62.7 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 43.39 | 51.73 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 39.42 | 47.3 |
| TraesCS2A01G219200.1 | Wheat | cytosol | 34.92 | 43.56 |
| TraesCS5A01G096800.1 | Wheat | cytosol | 35.19 | 43.46 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 36.24 | 43.35 |
| TraesCS7A01G481800.1 | Wheat | cytosol | 34.39 | 42.76 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 33.07 | 39.68 |
| TraesCS2A01G246600.1 | Wheat | cytosol | 33.6 | 38.14 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 21.96 | 27.12 |
| TraesCS1A01G088800.1 | Wheat | cytosol | 18.25 | 24.04 |
| TraesCS2A01G213400.1 | Wheat | cytosol | 15.08 | 21.27 |
| TraesCS5A01G240200.3 | Wheat | mitochondrion | 11.38 | 19.46 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS6A01G182200 |
| EnsemblPlants:TraesCS6A01G182200.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:-:209841596..209853772
Molecular Weight (calculated)
41728.7 Da
IEP (calculated)
6.285
GRAVY (calculated)
-0.308
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGFTKFDV EKFDGTDNFG LWQTRVKDIL TQQGILKGLQ ETKPTKVDNN AWEDMQVQAA ATIRLCLADQ MNDLFSSSSF KKYADLKDQV ALDEMEAGSG
101: SESANLDKFF EDVEGVKEDI SGLESMHRRL QSVNEESKTA HDARAVKSLR ARMDGDVVQV LRRAKVVKAK LEALDRANAA SRKLPGCGAG SSTDRTRSSV
201: VSGLGNKLKD LMDDFQGLRT RMAAEYKETV ARRYYTVTGE TAEESTIEAL IASGESETFL QKAIQRDQGR GQVMATVSEI QERHDAVKDI ERSLLELHQV
301: FLDMAALVEA QAHQLNNIET HVARASSFVI RGTVELESAR VYQKSSRKWA CIAVVAGAVL VLVIVLPILV NLKLLSGR
101: SESANLDKFF EDVEGVKEDI SGLESMHRRL QSVNEESKTA HDARAVKSLR ARMDGDVVQV LRRAKVVKAK LEALDRANAA SRKLPGCGAG SSTDRTRSSV
201: VSGLGNKLKD LMDDFQGLRT RMAAEYKETV ARRYYTVTGE TAEESTIEAL IASGESETFL QKAIQRDQGR GQVMATVSEI QERHDAVKDI ERSLLELHQV
301: FLDMAALVEA QAHQLNNIET HVARASSFVI RGTVELESAR VYQKSSRKWA CIAVVAGAVL VLVIVLPILV NLKLLSGR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.