Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P04820_001 | Banana | cytosol | 77.42 | 85.04 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 26.52 | 71.15 |
| Bra031761.1-P | Field mustard | cytosol | 41.94 | 70.91 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 71.68 | 64.94 |
| Zm00001d046482_P001 | Maize | cytosol | 71.68 | 64.72 |
| Zm00001d036931_P001 | Maize | cytosol | 71.33 | 64.4 |
| EER89986 | Sorghum | cytosol | 70.97 | 64.08 |
| Os02t0209900-01 | Rice | cytosol | 71.33 | 63.99 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 69.89 | 63.93 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 69.53 | 63.61 |
| KRH10761 | Soybean | cytosol | 68.46 | 62.83 |
| EES06503 | Sorghum | cytosol | 70.61 | 62.54 |
| KRH21567 | Soybean | cytosol | 68.1 | 62.5 |
| KRH41917 | Soybean | cytosol | 67.74 | 62.17 |
| AT1G61290.2 | Thale cress | cytosol | 67.38 | 62.05 |
| AT1G11250.1 | Thale cress | cytosol | 65.95 | 61.74 |
| CDY34843 | Canola | cytosol | 65.59 | 61.41 |
| CDY34656 | Canola | cytosol | 65.23 | 61.07 |
| Bra031759.1-P | Field mustard | cytosol | 65.23 | 61.07 |
| CDY20986 | Canola | cytosol | 65.23 | 61.07 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 66.67 | 60.98 |
| Bra019872.1-P | Field mustard | cytosol | 64.87 | 60.74 |
| CDX97943 | Canola | cytosol | 64.87 | 60.74 |
| CDY19350 | Canola | cytosol | 64.87 | 60.74 |
| Zm00001d053607_P001 | Maize | cytosol | 68.1 | 60.7 |
| Bra016846.1-P | Field mustard | cytosol | 64.52 | 60.4 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 65.95 | 60.13 |
| CDY70107 | Canola | cytosol | 64.16 | 60.07 |
| Solyc12g005580.1.1 | Tomato | cytosol | 65.95 | 59.35 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 64.87 | 59.15 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 64.87 | 59.15 |
| PGSC0003DMT400035739 | Potato | cytosol | 65.59 | 59.03 |
| CDY48554 | Canola | cytosol | 64.52 | 59.02 |
| Bra034202.1-P | Field mustard | cytosol | 64.52 | 59.02 |
| CDY21958 | Canola | cytosol | 64.52 | 59.02 |
| PGSC0003DMT400055777 | Potato | cytosol | 65.59 | 58.84 |
| AT4G03330.1 | Thale cress | cytosol | 63.08 | 57.7 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 51.61 | 52.55 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 69.18 | 51.06 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 43.01 | 48.98 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 50.9 | 45.66 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 44.44 | 41.61 |
| GSMUA_Achr2P17410_001 | Banana | cytosol | 42.65 | 40.34 |
| GSMUA_Achr10P... | Banana | cytosol | 40.86 | 37.5 |
| GSMUA_Achr7P16680_001 | Banana | plasma membrane | 46.24 | 34.49 |
| GSMUA_Achr10P... | Banana | cytosol | 33.33 | 34.19 |
| GSMUA_Achr9P24850_001 | Banana | cytosol | 33.69 | 33.57 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 34.05 | 30.16 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 31.18 | 27.62 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr10G28240_001 | EnsemblPlants:GSMUA_Achr10P28240_001 | EnsemblPlants:GSMUA_Achr10T28240_001 | InterPro:IPR000727 | UniProt:M0RM48 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000296DF19 | SEG:seg | : | : |
Description
Syntaxin-124 [Source:GMGC_GENE;Acc:GSMUA_Achr10G28240_001]
Coordinates
chr10:-:31128976..31129908
Molecular Weight (calculated)
31149.1 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.349
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSTTSF KKYTNLKQQV QMDQMEAGMS EMGAVAGVNL EQFFEEVESV KKDLRGLEGL YRRLQDANEE SKTLEALDRS NAQHRNVPGC GPGSSADRTR
101: TSVVSGLGNK LKDLMDSFQG LRTRIAEEYK ETVGRRYYTV TGTHADEETI ETLISSGASE TFVQKAIQEQ GRGDVMDTIS EIQERHDAVK EIEKSLLDLH
201: QVFLDMAALV EAQGHQLNDI ESHVAHASSF VRRGTVELET AREYQKSSRK WVCIGIVAAA LLIFILLLPL LPTLITLLR
101: TSVVSGLGNK LKDLMDSFQG LRTRIAEEYK ETVGRRYYTV TGTHADEETI ETLISSGASE TFVQKAIQEQ GRGDVMDTIS EIQERHDAVK EIEKSLLDLH
201: QVFLDMAALV EAQGHQLNDI ESHVAHASSF VRRGTVELET AREYQKSSRK WVCIGIVAAA LLIFILLLPL LPTLITLLR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.