Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G354500.1 | Wheat | cytosol | 97.39 | 97.39 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 97.06 | 97.06 |
| Zm00001d046482_P001 | Maize | cytosol | 78.76 | 77.99 |
| Zm00001d036931_P001 | Maize | cytosol | 78.1 | 77.35 |
| EER89986 | Sorghum | cytosol | 78.1 | 77.35 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 73.2 | 73.44 |
| Bra031761.1-P | Field mustard | cytosol | 36.93 | 68.48 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 55.56 | 66.93 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 67.32 | 66.88 |
| KRH21567 | Soybean | cytosol | 66.01 | 66.45 |
| KRH10761 | Soybean | cytosol | 66.01 | 66.45 |
| CDY34656 | Canola | cytosol | 64.71 | 66.44 |
| CDY34843 | Canola | cytosol | 64.71 | 66.44 |
| CDY20986 | Canola | cytosol | 64.38 | 66.11 |
| Bra031759.1-P | Field mustard | cytosol | 64.38 | 66.11 |
| GSMUA_Achr10P... | Banana | cytosol | 60.13 | 65.95 |
| KRH41917 | Soybean | cytosol | 65.36 | 65.79 |
| AT1G11250.1 | Thale cress | cytosol | 64.05 | 65.77 |
| CDY70107 | Canola | cytosol | 63.73 | 65.44 |
| CDX97943 | Canola | cytosol | 63.73 | 65.44 |
| Bra019872.1-P | Field mustard | cytosol | 63.73 | 65.44 |
| Bra016846.1-P | Field mustard | cytosol | 63.73 | 65.44 |
| AT1G61290.2 | Thale cress | cytosol | 64.71 | 65.35 |
| CDY19350 | Canola | cytosol | 63.4 | 65.1 |
| PGSC0003DMT400035739 | Potato | cytosol | 65.69 | 64.84 |
| Solyc12g005580.1.1 | Tomato | cytosol | 65.69 | 64.84 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 21.9 | 64.42 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 64.05 | 64.26 |
| PGSC0003DMT400055777 | Potato | cytosol | 64.71 | 63.67 |
| Bra034202.1-P | Field mustard | cytosol | 63.4 | 63.61 |
| CDY48554 | Canola | cytosol | 63.4 | 63.61 |
| CDY21958 | Canola | cytosol | 63.07 | 63.28 |
| AT4G03330.1 | Thale cress | cytosol | 62.75 | 62.95 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 49.35 | 47.19 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 46.08 | 44.76 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 23.53 | 44.17 |
| TraesCS5B01G102700.1 | Wheat | cytosol | 43.46 | 43.46 |
| TraesCS2B01G244700.1 | Wheat | cytosol | 42.48 | 42.9 |
| TraesCS7B01G394300.1 | Wheat | cytosol | 42.48 | 42.76 |
| TraesCS2B01G263700.1 | Wheat | cytosol | 42.16 | 42.72 |
| TraesCS5B01G034800.1 | Wheat | cytosol | 40.52 | 40.92 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 41.5 | 40.45 |
| TraesCS5B01G035600.1 | Wheat | cytosol | 39.22 | 38.84 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 37.25 | 36.19 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 26.14 | 26.14 |
| TraesCS2B01G238200.2 | Wheat | cytosol | 22.88 | 22.73 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| EnsemblPlantsGene:TraesCS7B01G260100 | EnsemblPlants:TraesCS7B01G260100.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:+:480276170..480277199
Molecular Weight (calculated)
34018.3 Da
IEP (calculated)
5.825
GRAVY (calculated)
-0.449
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSTNSF KKYADANPET SSADMEAGGM NGANLDQFFS DVEAVKEDLK GFETLHKRLQ STNEETKTAH DARTIKALRS RMDGDVEQVL KRAKAVKAKL
101: EALERDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RHDAVKDIER SLMDLHQVFL DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVIGGIALVV VVVTPVLINL
301: HILTLR
101: EALERDNANS RKAPDWGPGS SVDRTRTSVV AGLGKKLKDI MDDFQGLRAK MAAEYKETVA RRYFTVTGEH AEESTIDSLI SSGESESFLQ KAIQDQGRGQ
201: VMDTISEIQE RHDAVKDIER SLMDLHQVFL DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELEQAHEI QKDTRKWMCF AVIGGIALVV VVVTPVLINL
301: HILTLR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.