Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89986 | Sorghum | cytosol | 97.09 | 97.09 |
| Zm00001d046482_P001 | Maize | cytosol | 96.44 | 96.44 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 77.67 | 78.43 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 77.35 | 78.1 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 77.02 | 77.78 |
| Zm00001d053607_P001 | Maize | cytosol | 72.49 | 71.57 |
| GSMUA_Achr10P... | Banana | cytosol | 64.4 | 71.33 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 58.58 | 71.26 |
| Bra031761.1-P | Field mustard | cytosol | 37.86 | 70.91 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 70.23 | 70.45 |
| KRH10761 | Soybean | cytosol | 69.26 | 70.39 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 23.62 | 70.19 |
| KRH21567 | Soybean | cytosol | 68.93 | 70.07 |
| AT1G61290.2 | Thale cress | cytosol | 68.28 | 69.64 |
| KRH41917 | Soybean | cytosol | 67.96 | 69.08 |
| CDY20986 | Canola | cytosol | 66.34 | 68.79 |
| CDY34843 | Canola | cytosol | 66.34 | 68.79 |
| CDY34656 | Canola | cytosol | 66.34 | 68.79 |
| AT1G11250.1 | Thale cress | cytosol | 66.34 | 68.79 |
| Bra031759.1-P | Field mustard | cytosol | 66.02 | 68.46 |
| Bra016846.1-P | Field mustard | cytosol | 66.02 | 68.46 |
| Bra019872.1-P | Field mustard | cytosol | 66.02 | 68.46 |
| CDX97943 | Canola | cytosol | 66.02 | 68.46 |
| CDY19350 | Canola | cytosol | 65.7 | 68.12 |
| CDY70107 | Canola | cytosol | 65.7 | 68.12 |
| Solyc12g005580.1.1 | Tomato | cytosol | 67.96 | 67.74 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 66.67 | 67.54 |
| PGSC0003DMT400035739 | Potato | cytosol | 67.64 | 67.42 |
| PGSC0003DMT400055777 | Potato | cytosol | 66.67 | 66.24 |
| CDY48554 | Canola | cytosol | 63.11 | 63.93 |
| Bra034202.1-P | Field mustard | cytosol | 63.11 | 63.93 |
| CDY21958 | Canola | cytosol | 63.11 | 63.93 |
| AT4G03330.1 | Thale cress | cytosol | 61.81 | 62.62 |
| Zm00001d034365_P001 | Maize | plasma membrane | 54.37 | 54.9 |
| Zm00001d013323_P001 | Maize | cytosol | 47.25 | 46.5 |
| Zm00001d033919_P001 | Maize | plasma membrane | 46.93 | 46.33 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 40.78 | 41.45 |
| Zm00001d013115_P001 | Maize | cytosol | 19.09 | 40.41 |
| Zm00001d041716_P002 | Maize | cytosol | 40.78 | 39.75 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 40.13 | 39.37 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 40.13 | 39.37 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 36.25 | 38.36 |
| Zm00001d021664_P001 | Maize | cytosol | 40.13 | 34.83 |
| Zm00001d018867_P002 | Maize | plastid | 42.07 | 33.25 |
| Zm00001d035331_P001 | Maize | cytosol | 25.57 | 26.51 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:103629800 | MapMan:22.7.1.1 | UniProt:A0A1D6LSK3 | ProteinID:AQK82424.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0002207C4C | EnsemblPlantsGene:Zm00001d036931 | EnsemblPlants:Zm00001d036931_P001 | EnsemblPlants:Zm00001d036931_T001 | SEG:seg |
Description
Syntaxin-123
Coordinates
chr6:-:106758534..106759569
Molecular Weight (calculated)
34249.8 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.422
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADSSVAT SAGGAEAGGE SVINLDKFFE DVEAVKDDMR GLEGMYKGLQ STNEETKTAH DARTVKSLRS RMDKDVEQVL RRAKAIKTKL
101: EDLDRSNATS RKVPGCGPGS STDRTRTSVV AGLGKKLKDL MDDFQGLRAR MAAEYKETVA RRYYTVTGEK PEDSTIEALI SSGESESFLQ KAIQEQGRGQ
201: VMDTISEIQE RHDAVKDIER SLMDLHQVFL DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELESAREY QKSSRKWMCI AILASIVLIA VLVLPVLVNL
301: RILTLPTRR
101: EDLDRSNATS RKVPGCGPGS STDRTRTSVV AGLGKKLKDL MDDFQGLRAR MAAEYKETVA RRYYTVTGEK PEDSTIEALI SSGESESFLQ KAIQEQGRGQ
201: VMDTISEIQE RHDAVKDIER SLMDLHQVFL DMAALVEAQG HQLNDIESHV AHASSFVRRG TVELESAREY QKSSRKWMCI AILASIVLIA VLVLPVLVNL
301: RILTLPTRR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.