Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034202.1-P | Field mustard | cytosol | 99.34 | 99.34 |
| CDY48554 | Canola | cytosol | 98.69 | 98.69 |
| AT4G03330.1 | Thale cress | cytosol | 92.46 | 92.46 |
| CDY34843 | Canola | cytosol | 66.89 | 68.46 |
| CDY70107 | Canola | cytosol | 66.89 | 68.46 |
| CDY20986 | Canola | cytosol | 66.56 | 68.12 |
| CDY34656 | Canola | cytosol | 66.23 | 67.79 |
| CDX97943 | Canola | cytosol | 65.9 | 67.45 |
| CDY19350 | Canola | cytosol | 65.9 | 67.45 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 65.9 | 65.9 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 65.9 | 65.9 |
| GSMUA_Achr10P... | Banana | cytosol | 59.02 | 64.52 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 53.11 | 63.78 |
| Zm00001d036931_P001 | Maize | cytosol | 63.93 | 63.11 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 63.28 | 63.07 |
| EER89986 | Sorghum | cytosol | 63.61 | 62.78 |
| Zm00001d046482_P001 | Maize | cytosol | 63.28 | 62.46 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 62.3 | 62.09 |
| Os02t0209900-01 | Rice | cytosol | 62.62 | 61.41 |
| EES06503 | Sorghum | cytosol | 63.28 | 61.27 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 61.31 | 61.11 |
| Zm00001d053607_P001 | Maize | cytosol | 62.62 | 61.02 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 65.9 | 53.17 |
| CDY70958 | Canola | cytosol | 57.05 | 52.25 |
| CDX73851 | Canola | cytosol | 57.05 | 52.1 |
| CDY01061 | Canola | cytosol, plastid | 57.05 | 51.94 |
| CDY08492 | Canola | cytosol | 56.72 | 51.03 |
| CDY50666 | Canola | cytosol | 21.97 | 49.63 |
| CDY51747 | Canola | cytosol | 21.97 | 49.63 |
| CDY21160 | Canola | cytosol | 21.64 | 49.62 |
| CDY23212 | Canola | cytosol | 51.15 | 45.48 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 49.51 | 44.94 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 48.52 | 44.31 |
| CDY29963 | Canola | cytosol | 44.26 | 43.55 |
| CDX93553 | Canola | cytosol | 43.61 | 43.32 |
| CDX97497 | Canola | cytosol | 42.95 | 43.23 |
| CDY31137 | Canola | cytosol | 42.62 | 42.76 |
| CDX95050 | Canola | cytosol | 42.62 | 42.35 |
| CDY51748 | Canola | cytosol | 22.95 | 39.55 |
| CDY21161 | Canola | cytosol | 22.62 | 38.55 |
| CDY50665 | Canola | cytosol | 21.97 | 38.51 |
| CDY25157 | Canola | cytosol | 24.59 | 37.13 |
| CDY20921 | Canola | cytosol | 34.1 | 36.36 |
| CDY46302 | Canola | cytosol | 34.1 | 36.11 |
| CDY29223 | Canola | cytosol | 33.44 | 35.54 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 35.74 | 34.6 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 35.08 | 33.97 |
| CDX95336 | Canola | cytosol | 10.49 | 30.48 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078GB95 | UniProt:A0A078GB95 | EnsemblPlants:CDY21958 | ProteinID:CDY21958 |
| ProteinID:CDY21958.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00018289001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EE65BB | SEG:seg |
Description
BnaC09g00640DBnaC09g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB95]
Coordinates
chrLK032126:+:346125..347638
Molecular Weight (calculated)
34357.3 Da
IEP (calculated)
7.621
GRAVY (calculated)
-0.425
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLISSSFK RYTDLNHQVQ LDDIESQNAS LDSGNLDEFF GYVESVKEDM KAVDEIHKRL QDANEESKTV HDSKAVKKLR ARMDTSVTEV LKRVKMIKTK
101: LVALEKSNAA QRKVPGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMASEYKETV ERRYSTVTGQ KADEETIEKL ISSGESERFL QKAIQEQGRG
201: QIMDTLSEIQ ERHDAVKDIE RSLLELHQIF LDMAALVEAQ GSILNDIESN VSKASSFVMR GSEQLQGAKV LQRNSRKWTC IAIILAIVLV IVILFPILYT
301: SLLKP
101: LVALEKSNAA QRKVPGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMASEYKETV ERRYSTVTGQ KADEETIEKL ISSGESERFL QKAIQEQGRG
201: QIMDTLSEIQ ERHDAVKDIE RSLLELHQIF LDMAALVEAQ GSILNDIESN VSKASSFVMR GSEQLQGAKV LQRNSRKWTC IAIILAIVLV IVILFPILYT
301: SLLKP
001: MNDLISSSFK RYTDLNHQVQ LDDIESQNVS LDSGNLDEFF GYVESVKEDM KAVDEIHKRL QDANEESKTV HDSKAVKKLR ARMDSSVTEV LKRVKMIKTK
101: LVALEKSNAA QRKVAGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMATEYKETV ERRYFTVTGQ KADEETVEKL ISSGESERFL QKAIQEQGRG
201: QVMDTLSEIQ ERHDTVKEIE RSLLELHQVF LDMAALVEAQ GNMLNDIESN VSKASSFVMR GTDQLHGAKV LQRNNRKWAC IATILAIVVV IVILFPILFN
301: TLLRP
101: LVALEKSNAA QRKVAGCGPG SSADRTRTSV VSGLGKKLKD MMDDFQRLRT KMATEYKETV ERRYFTVTGQ KADEETVEKL ISSGESERFL QKAIQEQGRG
201: QVMDTLSEIQ ERHDTVKEIE RSLLELHQVF LDMAALVEAQ GNMLNDIESN VSKASSFVMR GTDQLHGAKV LQRNNRKWAC IATILAIVVV IVILFPILFN
301: TLLRP
Arabidopsis Description
SYP123SYP123 [Source:UniProtKB/TrEMBL;Acc:A0A178V4Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.