Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018615.1-P | Field mustard | cytosol | 99.02 | 99.02 |
| CDX95050 | Canola | cytosol | 97.07 | 97.07 |
| CDX97497 | Canola | cytosol | 88.93 | 90.1 |
| CDY31137 | Canola | cytosol | 88.27 | 89.14 |
| AT1G08560.1 | Thale cress | cytosol | 83.06 | 82.26 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 72.31 | 71.38 |
| PGSC0003DMT400041982 | Potato | cytosol | 71.66 | 70.74 |
| Solyc06g053760.2.1 | Tomato | cytosol | 71.01 | 70.1 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 53.75 | 67.35 |
| KRH08461 | Soybean | cytosol | 68.4 | 65.22 |
| KRH70119 | Soybean | cytosol | 66.12 | 63.84 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 33.88 | 63.8 |
| KXG37622 | Sorghum | cytosol | 60.91 | 59.94 |
| Zm00001d033919_P001 | Maize | plasma membrane | 59.93 | 58.79 |
| Zm00001d013323_P001 | Maize | cytosol | 59.93 | 58.6 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 58.63 | 57.88 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 56.68 | 55.06 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 55.7 | 54.46 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 55.7 | 54.11 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 56.35 | 47.66 |
| CDY34843 | Canola | cytosol | 43.0 | 44.3 |
| CDY34656 | Canola | cytosol | 42.67 | 43.96 |
| CDY70107 | Canola | cytosol | 42.35 | 43.62 |
| CDY20986 | Canola | cytosol | 42.35 | 43.62 |
| CDY19350 | Canola | cytosol | 42.35 | 43.62 |
| CDX97943 | Canola | cytosol | 42.35 | 43.62 |
| CDY21160 | Canola | cytosol | 18.89 | 43.61 |
| CDY21958 | Canola | cytosol | 43.32 | 43.61 |
| CDY48554 | Canola | cytosol | 43.32 | 43.61 |
| CDY50666 | Canola | cytosol | 18.24 | 41.48 |
| CDY51747 | Canola | cytosol | 17.92 | 40.74 |
| CDY20921 | Canola | cytosol | 37.46 | 40.21 |
| CDY29223 | Canola | cytosol | 37.46 | 40.07 |
| CDY70958 | Canola | cytosol | 43.32 | 39.94 |
| CDY46302 | Canola | cytosol | 37.46 | 39.93 |
| CDX73851 | Canola | cytosol | 43.0 | 39.52 |
| CDY01061 | Canola | cytosol, plastid | 43.0 | 39.4 |
| CDY08492 | Canola | cytosol | 43.32 | 39.23 |
| CDY25157 | Canola | cytosol | 24.76 | 37.62 |
| CDY29963 | Canola | cytosol | 37.13 | 36.77 |
| CDY23212 | Canola | cytosol | 40.07 | 35.86 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 38.11 | 34.82 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 37.46 | 34.43 |
| CDY21161 | Canola | cytosol | 18.89 | 32.4 |
| CDY51748 | Canola | cytosol | 18.24 | 31.64 |
| CDY50665 | Canola | cytosol | 17.26 | 30.46 |
| Zm00001d035331_P001 | Maize | cytosol | 26.06 | 26.85 |
| CDX95336 | Canola | cytosol | 9.12 | 26.67 |
| OQU78880 | Sorghum | cytosol | 26.38 | 26.3 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 26.06 | 26.14 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 25.73 | 25.82 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 25.73 | 25.82 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 25.41 | 25.49 |
| Os12t0192300-00 | Rice | plasma membrane | 26.06 | 22.99 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | GO:A0A078E217 | EnsemblPlants:CDX93553 |
| ProteinID:CDX93553 | ProteinID:CDX93553.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00156229001 | InterPro:IPR000727 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EDFABA | SEG:seg | : | : |
Description
BnaA06g04950D
Coordinates
chrLK031876:+:692751..694384
Molecular Weight (calculated)
34972.0 Da
IEP (calculated)
6.423
GRAVY (calculated)
-0.483
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFT SYVDLKKSAM KDLESGPPDS DLEMANNTTD SSNLSSFLEE AERVKSEISL ITETLSRISQ YNDESKSAHK SDSVKSLRNK ISNEIVSGLR
101: KAKSIKATLE EMDRANREIR RLSGTPVYRS RVAVTNGLRK KLKEVMMEFQ GLRQRMMSEY KETVERRYFT VTGERPDEEM IEKIVSDGGE EFLARAVQEH
201: GRGKVLETVV EIQDRYDAAK EIEKSLLELH QVFLDMAVMV EAQGEQMDEI EHHVMNASHY VKDGAKELNT AKKHQRSSRK WMCIGIIVLL LIILVVIIPI
301: ITSFTSS
101: KAKSIKATLE EMDRANREIR RLSGTPVYRS RVAVTNGLRK KLKEVMMEFQ GLRQRMMSEY KETVERRYFT VTGERPDEEM IEKIVSDGGE EFLARAVQEH
201: GRGKVLETVV EIQDRYDAAK EIEKSLLELH QVFLDMAVMV EAQGEQMDEI EHHVMNASHY VKDGAKELNT AKKHQRSSRK WMCIGIIVLL LIILVVIIPI
301: ITSFTSS
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.