Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G147100.1 | Wheat | cytosol | 95.1 | 95.1 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 94.44 | 94.44 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 94.12 | 94.12 |
| Os12t0192300-00 | Rice | plasma membrane | 74.84 | 65.8 |
| OQU78880 | Sorghum | cytosol | 66.01 | 65.58 |
| Zm00001d035331_P001 | Maize | cytosol | 63.4 | 65.1 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 27.12 | 33.88 |
| Solyc06g053760.2.1 | Tomato | cytosol | 31.05 | 30.55 |
| PGSC0003DMT400041982 | Potato | cytosol | 30.39 | 29.9 |
| KRH08461 | Soybean | cytosol | 31.05 | 29.5 |
| KRH70119 | Soybean | cytosol | 30.39 | 29.25 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 29.09 | 28.62 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 32.03 | 27.0 |
| CDX97497 | Canola | cytosol | 26.14 | 26.4 |
| CDY31137 | Canola | cytosol | 26.14 | 26.32 |
| Bra030733.1-P | Field mustard | cytosol | 25.82 | 25.99 |
| CDX93553 | Canola | cytosol | 25.49 | 25.41 |
| AT1G08560.1 | Thale cress | cytosol | 25.49 | 25.16 |
| Bra018615.1-P | Field mustard | cytosol | 25.16 | 25.08 |
| HORVU6Hr1G095330.1 | Barley | cytosol | 24.51 | 24.92 |
| CDX95050 | Canola | cytosol | 24.84 | 24.76 |
| HORVU2Hr1G045350.3 | Barley | cytosol | 23.2 | 24.23 |
| HORVU5Hr1G026120.1 | Barley | cytosol | 22.88 | 22.88 |
| HORVU2Hr1G057350.2 | Barley | cytosol | 23.86 | 22.19 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 18.3 | 21.96 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 16.01 | 15.56 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 14.38 | 13.97 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 6.86 | 13.55 |
| HORVU2Hr1G043130.15 | Barley | cytosol | 13.4 | 13.06 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EMBL:AK362265 | EMBL:AK364163 | EMBL:AK371082 | ncoils:Coil |
| UniProt:F2DEE8 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | EnsemblPlantsGene:HORVU6Hr1G028850 | EnsemblPlants:HORVU6Hr1G028850.1 | InterPro:IPR000727 | PFAM:PF00804 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF155 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002005F7F | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DEE8]
Coordinates
chrchr6H:+:115838049..115839803
Molecular Weight (calculated)
31754.1 Da
IEP (calculated)
8.523
GRAVY (calculated)
-0.021
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTDSFV GAAAAAPQAK RQQDGGSAAG VDKLQAFLAE AEAAKNEMTA LRNELSQLQS AHEASKSLLR PGAPRAATQA ALVRLLGSAR RLRARLASMD
101: RRAPAPAAHA TAGLRGRLQD LTAGVQTLRR QVSAERRGDA ARCYLAVAGE APTEDQLDRL VASGSAGAND ADEAMRAAML SSSEVEKVEG GLLELQQLFL
201: DMAALVESQG PLLEDVERHV AAAAEDVGAA EGELREAQRL QGAARRRRMW LGGGLAALLL VALAVAAVVV ALALSRRKGG SVQLAGAAMS GFGEFAGVGV
301: FRFPGL
101: RRAPAPAAHA TAGLRGRLQD LTAGVQTLRR QVSAERRGDA ARCYLAVAGE APTEDQLDRL VASGSAGAND ADEAMRAAML SSSEVEKVEG GLLELQQLFL
201: DMAALVESQG PLLEDVERHV AAAAEDVGAA EGELREAQRL QGAARRRRMW LGGGLAALLL VALAVAAVVV ALALSRRKGG SVQLAGAAMS GFGEFAGVGV
301: FRFPGL
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.