Factsheet for Bra018615.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005361.1-P
Bra006289.1-P
Bra008713.1-P
Bra010436.1-P
Bra010500.1-P
Bra011320.1-P
Bra012620.1-P
Bra012978.1-P
Bra013774.1-P
Bra014333.1-P
Bra014558.1-P
Bra016706.1-P
Bra017331.1-P
Bra018026.1-P
Bra019662.1-P
Bra019760.1-P
Bra020006.1-P
Bra021478.1-P
Bra023003.1-P
Bra023511.1-P
Bra023964.1-P
Bra024481.1-P
Bra024985.1-P
Bra024986.1-P
Bra026455.1-P
Bra026839.1-P
Bra026974.1-P
Bra027986.1-P
Bra029328.1-P
Bra029785.1-P
Bra029928.1-P
Bra032828.1-P
Bra034085.1-P
Bra034692.1-P
Bra034693.1-P
Bra035298.1-P
Bra035427.1-P
Bra037242.1-P
Bra039150.1-P
Bra039911.1-P
Bra040115.1-P
Bra040415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08560.1	Bra020006.1-P	AT1G09630.1	19959995
AT1G08560.1	Bra019760.1-P	AT1G12360.1	11157980
AT1G08560.1	Bra026974.1-P	AT1G12360.1	11157980
AT1G08560.1	Bra016706.1-P	AT1G14320.1	24556609
AT1G08560.1	Bra019662.1-P	AT1G14320.1	24556609
AT1G08560.1	Bra026839.1-P	AT1G14320.1	24556609
AT1G08560.1	Bra032828.1-P	AT1G27400.1	24556609
AT1G08560.1	Bra024985.1-P	AT1G43170.1	24556609
AT1G08560.1	Bra024986.1-P	AT1G43170.1	24556609
AT1G08560.1	Bra027986.1-P	AT1G43170.1	24556609
AT1G08560.1	Bra035298.1-P	AT1G43170.1	24556609
AT1G08560.1	Bra035427.1-P	AT1G59750.1	19959995
AT1G08560.1	Bra024481.1-P	AT2G18020.1	24556609
AT1G08560.1	Bra037242.1-P	AT2G18020.1	24556609
AT1G08560.1	Bra039911.1-P	AT2G18020.1	24556609
AT1G08560.1	Bra005361.1-P	AT2G35190.1	23515225
AT1G08560.1	Bra017331.1-P	AT2G35190.1	23515225
AT1G08560.1	Bra023003.1-P	AT2G35190.1	23515225
AT1G08560.1	Bra014558.1-P	AT2G42740.1	24556609
AT1G08560.1	Bra021478.1-P	AT3G02080.1	24556609
AT1G08560.1	Bra039150.1-P	AT3G02080.1	24556609
AT1G08560.1	Bra040115.1-P	AT3G04920.1	24556609
AT1G08560.1	Bra040415.1-P	AT3G04920.1	24556609
AT1G08560.1	Bra014333.1-P	AT3G09740.1	23515225
AT1G08560.1	Bra029785.1-P	AT3G09740.1	23515225
AT1G08560.1	Bra034085.1-P	AT3G09740.1	23515225
AT1G08560.1	Bra034692.1-P	AT3G13300.1	24556609
AT1G08560.1	Bra034693.1-P	AT3G13300.1	24556609
AT1G08560.1	Bra018026.1-P	AT3G48930.1	24556609
AT1G08560.1	Bra029928.1-P	AT3G48930.1	24556609
AT1G08560.1	Bra012620.1-P	AT4G18060.1	24556609
AT1G08560.1	Bra010500.1-P	AT4G24190.1	24556609
AT1G08560.1	Bra013774.1-P	AT4G24190.1	24556609
AT1G08560.1	Bra010436.1-P	AT4G26230.1	24556609
AT1G08560.1	Bra026455.1-P	AT4G26230.1	24556609
AT1G08560.1	Bra011320.1-P	AT4G32070.1	24556609
AT1G08560.1	Bra023964.1-P	AT4G32070.1	24556609
AT1G08560.1	Bra006289.1-P	AT5G15200.1	24556609
AT1G08560.1	Bra008713.1-P	AT5G15200.1	24556609
AT1G08560.1	Bra023511.1-P	AT5G15200.1	24556609
AT1G08560.1	Bra012978.1-P	AT5G61210.1	23515225
AT1G08560.1	Bra029328.1-P	AT5G61210.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93553	Canola	cytosol	99.02	99.02
CDX95050	Canola	cytosol	97.72	97.72
Bra030733.1-P	Field mustard	cytosol	89.25	90.13
AT1G08560.1	Thale cress	cytosol	83.39	82.58
VIT_04s0008g02770.t01	Wine grape	cytosol	72.64	71.7
PGSC0003DMT400041982	Potato	cytosol	71.34	70.42
Solyc06g053760.2.1	Tomato	cytosol	70.68	69.77
GSMUA_Achr1P25170_001	Banana	cytosol	53.75	67.35
KRH08461	Soybean	cytosol	68.08	64.91
TraesCS4B01G067100.1	Wheat	cytosol	33.88	63.8
KRH70119	Soybean	cytosol	65.8	63.52
KXG37622	Sorghum	cytosol	60.59	59.62
Zm00001d033919_P001	Maize	plasma membrane	59.61	58.47
Zm00001d013323_P001	Maize	cytosol	59.61	58.28
Os03t0736500-01	Rice	cytosol, plasma membrane	58.31	57.56
TraesCS4D01G066100.1	Wheat	cytosol	56.35	54.75
TraesCS4B01G067200.1	Wheat	cytosol	55.37	54.14
TraesCS4A01G247700.1	Wheat	cytosol	55.37	53.8
Bra031761.1-P	Field mustard	cytosol	28.01	52.12
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	16.61	49.04
HORVU4Hr1G011180.2	Barley	cytosol	56.03	47.38
Bra031759.1-P	Field mustard	cytosol	43.0	44.3
Bra034202.1-P	Field mustard	cytosol	43.32	43.61
Bra019872.1-P	Field mustard	cytosol	42.02	43.29
Bra016846.1-P	Field mustard	cytosol	41.69	42.95
Bra024476.1-P	Field mustard	cytosol	37.78	40.56
Bra039622.1-P	Field mustard	cytosol	37.13	39.58
Bra001422.1-P	Field mustard	cytosol	42.67	39.34
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	41.37	39.08
Bra009318.1-P	Field mustard	cytosol	37.46	37.95
Bra005968.1-P	Field mustard	cytosol	36.81	37.17
Bra028672.1-P	Field mustard	cytosol	36.48	36.96
Bra033436.1-P	Field mustard	cytosol	39.74	35.67
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	34.85	34.74
Bra036431.1-P	Field mustard	cytosol	30.29	33.45
Bra031972.1-P	Field mustard	cytosol	29.32	32.14
Zm00001d035331_P001	Maize	cytosol	25.73	26.51
OQU78880	Sorghum	cytosol	26.06	25.97
TraesCS6B01G175300.1	Wheat	cytosol	25.73	25.82
TraesCS6A01G147100.1	Wheat	cytosol	25.41	25.49
TraesCS6D01G136400.1	Wheat	cytosol	25.41	25.49
HORVU6Hr1G028850.1	Barley	cytosol	25.08	25.16
Os12t0192300-00	Rice	plasma membrane	25.73	22.7

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:13.4.2.3.1	MapMan:22.7.1.1	EnsemblPlantsGene:Bra018615	EnsemblPlants:Bra018615.1
EnsemblPlants:Bra018615.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
InterPro:IPR000727	UniProt:M4DQ24	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF91	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253E79A	SEG:seg

Description

AT1G08560 (E=7e-130) SYP111, KN, ATSYP111 | SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor

Coordinates

chrA06:-:2956661..2958052

Molecular Weight (calculated)

34928.1 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.462

Length

307 amino acids

Sequence
(BLAST)

001: MNDLMTKSFT SYVDLKKSAM KDLESGPPDS DLEMANNITD SSNLSSFLEE AEKVKSEISL ITETLSRISQ YNDESKSAHK SDSVKSLRNK ISNEIVSGLR
101: KAKSIKATLE EMDRANREIK RLSGTPVYRS RVAVTNGLRK KLKEVMMEFQ GLRQRMMSEY KETVERRYFT VTGERPDEEM IEKIVSDGGE EFLARAVQEH
201: GRGKVLETVV EIQDRYDAAK EIEKSLLELH QVFLDMAVMV EAQGEQMDEI EHHVMNASHY VKDGAKELNT AKKHQRSSRK WMCIGIIVLL LIILVVIIPI
301: ITSFTSS

Best Arabidopsis Sequence Match ( AT1G08560.1 )
(BLAST)

001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS

Arabidopsis Description

KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.