Factsheet for Bra024476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29223	Canola	cytosol	97.9	97.56
Bra039622.1-P	Field mustard	cytosol	86.71	86.11
AT2G18260.1	Thale cress	cytosol	82.17	77.05
VIT_04s0043g00820.t01	Wine grape	cytosol	61.19	58.53
VIT_04s0023g01980.t01	Wine grape	cytosol	60.84	58.19
KRH76768	Soybean	cytosol	58.74	56.19
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	58.39	55.85
Solyc02g085090.1.1	Tomato	cytosol	58.04	55.52
KRH28699	Soybean	cytosol	57.69	55.18
GSMUA_Achr10P...	Banana	cytosol	43.36	45.59
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	14.69	40.38
KRH59335	Soybean	cytosol	20.98	39.47
KRH43180	Soybean	cytosol	34.27	38.13
Bra018615.1-P	Field mustard	cytosol	40.56	37.78
Bra030733.1-P	Field mustard	cytosol	38.81	36.51
Bra031759.1-P	Field mustard	cytosol	36.36	34.9
Bra031761.1-P	Field mustard	cytosol	19.58	33.94
Bra016846.1-P	Field mustard	cytosol	35.31	33.89
Bra034202.1-P	Field mustard	cytosol	36.01	33.77
Bra019872.1-P	Field mustard	cytosol	34.97	33.56
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	34.97	30.77
Bra001422.1-P	Field mustard	cytosol	34.97	30.03
Bra009318.1-P	Field mustard	cytosol	31.47	29.7
Bra005968.1-P	Field mustard	cytosol	31.47	29.61
Bra033436.1-P	Field mustard	cytosol	34.97	29.24
Bra031972.1-P	Field mustard	cytosol	27.97	28.57
Bra028672.1-P	Field mustard	cytosol	30.07	28.38
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	30.07	27.92
Bra036431.1-P	Field mustard	cytosol	26.57	27.34

Protein Annotations

Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra024476	EnsemblPlants:Bra024476.1	EnsemblPlants:Bra024476.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4E6S1
PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF123
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253EF92	SEG:seg	:	:

Description

AT2G18260 (E=2e-101) SYP112, ATSYP112 | SYP112 (SYNTAXIN OF PLANTS 112); SNAP receptor

Coordinates

chrA06:-:16015737..16016597

Molecular Weight (calculated)

32289.9 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.287

Length

286 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYVELKKQAK IDTESDRDVE KGELNEEALS AFFAEIESIK TLIEEITHLL LELQNLNEET KSTHSAKILR GLRDRMESNI VAVSRKANTA
101: KALIDAVETA NRRSGSCTDR TRVAITNGVR AKLRETMGEF HRLREMIFAD YREDLKRKYF LAIGEEPSDE DVEKMISGGL VKTFEVKAEM DLEARERHEA
201: VNEIKRSLNR LHQVFLDMAV LVETQGDGVD DIEANVAVAG SFVSGGTNSL FYANQMRKKN KKWVVWGSVL GVIILLVCLI SMLASR

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.