Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G067100.1 | Wheat | cytosol | 44.49 | 66.87 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 70.61 | 55.63 |
| CDX97497 | Canola | cytosol | 68.16 | 55.12 |
| KXG37622 | Sorghum | cytosol | 69.8 | 54.81 |
| CDY31137 | Canola | cytosol | 67.76 | 54.61 |
| Zm00001d013323_P001 | Maize | cytosol | 69.8 | 54.46 |
| KRH70119 | Soybean | cytosol | 70.2 | 54.09 |
| Zm00001d033919_P001 | Maize | plasma membrane | 68.98 | 53.99 |
| Bra030733.1-P | Field mustard | cytosol | 66.94 | 53.95 |
| Bra018615.1-P | Field mustard | cytosol | 67.35 | 53.75 |
| CDX93553 | Canola | cytosol | 67.35 | 53.75 |
| CDX95050 | Canola | cytosol | 67.35 | 53.75 |
| KRH08461 | Soybean | cytosol | 70.61 | 53.73 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 67.76 | 53.38 |
| PGSC0003DMT400041982 | Potato | cytosol | 67.35 | 53.05 |
| AT1G08560.1 | Thale cress | cytosol | 66.12 | 52.26 |
| Solyc06g053760.2.1 | Tomato | cytosol | 66.12 | 52.09 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 64.9 | 50.64 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 65.31 | 50.63 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 64.49 | 50.0 |
| GSMUA_Achr10P... | Banana | cytosol | 48.98 | 43.01 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 62.86 | 42.42 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 43.67 | 42.13 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 43.67 | 39.05 |
| GSMUA_Achr2P17410_001 | Banana | cytosol | 42.86 | 35.59 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 40.82 | 33.56 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 40.41 | 31.83 |
| GSMUA_Achr10P... | Banana | cytosol | 35.1 | 31.62 |
| GSMUA_Achr10P... | Banana | cytosol | 37.96 | 30.59 |
| OQU78880 | Sorghum | cytosol | 37.14 | 29.55 |
| GSMUA_Achr9P24850_001 | Banana | cytosol | 33.47 | 29.29 |
| GSMUA_Achr7P16680_001 | Banana | plasma membrane | 44.08 | 28.88 |
| Zm00001d035331_P001 | Maize | cytosol | 35.1 | 28.86 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 34.69 | 27.78 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 34.69 | 27.78 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 34.29 | 27.45 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 33.88 | 27.12 |
| Os12t0192300-00 | Rice | plasma membrane | 37.14 | 26.15 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009506 | GO:GO:0009524 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr1G25170_001 | EnsemblPlants:GSMUA_Achr1P25170_001 | EnsemblPlants:GSMUA_Achr1T25170_001 | InterPro:IPR000727 | UniProt:M0S2X4 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 |
| SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000295C8BF | SEG:seg | : | : | : |
Description
Syntaxin-related protein KNOLLE [Source:GMGC_GENE;Acc:GSMUA_Achr1G25170_001]
Coordinates
chr1:+:19584203..19585141
Molecular Weight (calculated)
27766.5 Da
IEP (calculated)
5.026
GRAVY (calculated)
-0.258
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFY SYADLKKEAL KDLESGAADD VAIEMAAGDA DGHLRHFFEE AGLAKEEMAA IRDLLARLQA ANEESKRPLK ELMMEFQALR QRMMAEYRET
101: VERRYFTVTG EAPEEEVIER IIANGESEGM VKKAMLEHGR GKVLATVHEI QDRHDAAKEV ERSLLELHQV FLDMAVMVEA QGEQMDDIEH HVASAAHYVK
201: DGTRELKCAK EYQRSSRKWL CIGIILLLLI ILVIVIPIAT SFSKS
101: VERRYFTVTG EAPEEEVIER IIANGESEGM VKKAMLEHGR GKVLATVHEI QDRHDAAKEV ERSLLELHQV FLDMAVMVEA QGEQMDDIEH HVASAAHYVK
201: DGTRELKCAK EYQRSSRKWL CIGIILLLLI ILVIVIPIAT SFSKS
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.