Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03020_001 | Banana | cytosol | 85.4 | 75.24 |
| EER93336 | Sorghum | cytosol | 78.47 | 70.03 |
| Zm00001d034365_P001 | Maize | plasma membrane | 77.37 | 69.28 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 76.28 | 65.93 |
| Os03t0787000-01 | Rice | plasma membrane | 77.74 | 64.55 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 75.18 | 64.38 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 75.18 | 64.17 |
| PGSC0003DMT400072325 | Potato | cytosol | 67.52 | 61.26 |
| Solyc01g006950.2.1 | Tomato | nucleus | 66.79 | 61.0 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 56.57 | 60.78 |
| Solyc10g081850.1.1 | Tomato | cytosol | 67.15 | 60.73 |
| PGSC0003DMT400054965 | Potato | cytosol | 65.69 | 60.0 |
| KRH32862 | Soybean | cytosol | 65.33 | 58.5 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 68.25 | 57.72 |
| KRH72168 | Soybean | cytosol | 63.87 | 57.38 |
| CDY70958 | Canola | cytosol | 66.79 | 54.95 |
| Bra001422.1-P | Field mustard | cytosol | 66.79 | 54.95 |
| CDX73851 | Canola | cytosol | 66.79 | 54.79 |
| CDY01061 | Canola | cytosol, plastid | 65.69 | 53.73 |
| KRH32861 | Soybean | mitochondrion | 64.96 | 53.61 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 67.52 | 53.47 |
| KRH72169 | Soybean | cytosol | 65.33 | 53.43 |
| CDY08492 | Canola | cytosol | 65.69 | 53.1 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 62.41 | 52.62 |
| KRH68016 | Soybean | cytosol | 55.47 | 51.7 |
| GSMUA_Achr10P... | Banana | cytosol | 52.55 | 51.61 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 47.81 | 51.57 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 55.47 | 50.5 |
| Zm00001d013115_P001 | Maize | cytosol | 26.64 | 50.0 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 52.55 | 49.32 |
| AT3G52400.1 | Thale cress | cytosol | 60.95 | 48.97 |
| Bra033436.1-P | Field mustard | cytosol | 59.49 | 47.66 |
| CDY23212 | Canola | cytosol | 59.49 | 47.52 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 53.28 | 47.4 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 55.47 | 45.24 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 55.11 | 45.21 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 48.18 | 44.3 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 39.05 | 43.67 |
| GSMUA_Achr2P17410_001 | Banana | cytosol | 46.72 | 43.39 |
| CDX95336 | Canola | cytosol | 16.42 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol | 43.07 | 38.82 |
| GSMUA_Achr9P24850_001 | Banana | cytosol | 39.05 | 38.21 |
| GSMUA_Achr10P... | Banana | cytosol | 36.13 | 36.4 |
| GSMUA_Achr7P16680_001 | Banana | plasma membrane | 48.91 | 35.83 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 20.07 | 35.48 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr6G31140_001 | EnsemblPlants:GSMUA_Achr6P31140_001 | EnsemblPlants:GSMUA_Achr6T31140_001 | InterPro:IPR000727 |
| UniProt:M0TBQ9 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00029668D9 | SEG:seg | : |
Description
Syntaxin-121 [Source:GMGC_GENE;Acc:GSMUA_Achr6G31140_001]
Coordinates
chr6:-:31030852..31031970
Molecular Weight (calculated)
30594.8 Da
IEP (calculated)
7.629
GRAVY (calculated)
-0.257
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSAFF EDVEAIKDEL REVERLHRSL HEANEAGKTL HEASAVRELR GRMDADVALA LKKAKLIKLR LESLDRANAA NRAVPGCGPG SSTDRTRSSV
101: VAGLRKKLRD SMEAFAELRR RIAAEYRETV GRRYYTVTGE SPDEATVDAL VATGEGERFL QRAIEEQGRG RVLDVVAEIQ ERHGAVAELE RSLLELQQVF
201: MDMAVLVEAQ GQQLDDIESN VGRAQSFVRH GTDNLTTARV YQKNTRKWTC IAIILLLIII LVIVLPTVLS LTKK
101: VAGLRKKLRD SMEAFAELRR RIAAEYRETV GRRYYTVTGE SPDEATVDAL VATGEGERFL QRAIEEQGRG RVLDVVAEIQ ERHGAVAELE RSLLELQQVF
201: MDMAVLVEAQ GQQLDDIESN VGRAQSFVRH GTDNLTTARV YQKNTRKWTC IAIILLLIII LVIVLPTVLS LTKK
001: MANPAGSTGG VNLDKFFEDV ESVKEELKEL DRLNETLSSC HEQSKTLHNA KAVKDLRSKM DGDVGVALKK AKMIKVKLEA LDRANAANRS LPGCGPGSSS
101: DRTRTSVLNG LRKKLMDSMD SFNRLRELIS SEYRETVQRR YFTVTGENPD ERTLDRLIST GESERFLQKA IQEQGRGRVL DTINEIQERH DAVKDIEKNL
201: RELHQVFLDM AVLVEHQGAQ LDDIESHVGR ASSFIRGGTD QLQTARVYQK NTRKWTCIAI IILIIIITVV VLAVLKPWNN SSGGGGGGGG GGTTGGSQPN
301: SGTPPNPPQA RRLLR
101: DRTRTSVLNG LRKKLMDSMD SFNRLRELIS SEYRETVQRR YFTVTGENPD ERTLDRLIST GESERFLQKA IQEQGRGRVL DTINEIQERH DAVKDIEKNL
201: RELHQVFLDM AVLVEHQGAQ LDDIESHVGR ASSFIRGGTD QLQTARVYQK NTRKWTCIAI IILIIIITVV VLAVLKPWNN SSGGGGGGGG GGTTGGSQPN
301: SGTPPNPPQA RRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.