CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96271	Soybean	cytosol, golgi, mitochondrion	91.16	89.04
KRH72168	Soybean	cytosol	67.01	64.59
KRH32862	Soybean	cytosol	67.01	64.38
Solyc01g006950.2.1	Tomato	nucleus	57.48	56.33
PGSC0003DMT400054965	Potato	cytosol	57.14	56.0
GSMUA_Achr6P31140_001	Banana	cytosol	51.7	55.47
PGSC0003DMT400072325	Potato	cytosol	54.42	52.98
Solyc10g081850.1.1	Tomato	cytosol	54.42	52.81
VIT_08s0032g01150.t01	Wine grape	cytosol	57.82	52.47
KRH32861	Soybean	mitochondrion	56.8	50.3
KRH72169	Soybean	cytosol	56.8	49.85
EER93336	Sorghum	cytosol	51.7	49.51
Zm00001d034365_P001	Maize	plasma membrane	51.36	49.35
TraesCS5B01G427600.1	Wheat	cytosol, golgi, nucleus	52.38	48.12
TraesCSU01G076400.1	Wheat	cytosol, golgi, nucleus	52.38	47.98
TraesCS5A01G425600.1	Wheat	cytosol, nucleus, plastid	51.7	47.95
GSMUA_Achr8P03020_001	Banana	cytosol	50.68	47.91
KRH41917	Soybean	cytosol	48.98	47.37
Os03t0787000-01	Rice	plasma membrane	53.06	47.27
KRH10761	Soybean	cytosol	47.96	46.38
KRH21567	Soybean	cytosol	47.96	46.38
HORVU5Hr1G103590.1	Barley	cytosol, mitochondrion	37.07	42.75
Zm00001d013115_P001	Maize	cytosol	19.73	39.73
Zm00001d013114_P001	Maize	cytosol, plastid	38.44	38.7
KRH70119	Soybean	cytosol	40.14	37.11
KRH08507	Soybean	cytosol	38.1	36.36
KRH08461	Soybean	cytosol	39.46	36.02
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	36.39	34.97
KRH26811	Soybean	cytosol	36.39	34.97
KRH28699	Soybean	cytosol	32.99	32.44
KRH76768	Soybean	cytosol	32.65	32.11
HORVU5Hr1G103620.1	Barley	cytosol	15.99	30.32
KRH70169	Soybean	cytosol	14.97	29.93
KRH59335	Soybean	cytosol	12.59	24.34
KRH43180	Soybean	cytosol	21.09	24.12

Protein Annotations

Gene3D:1.20.58.70	EntrezGene:100810727	MapMan:22.7.1.1	EMBL:ACUP02002097	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G202800
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	UniProt:I1JQ97
InterPro:IPR000727	EnsemblPlants:KRH68016	ProteinID:KRH68016	ProteinID:KRH68016.1	PFAM:PF00804	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF69	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00023372A5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:41136204..41139344

Molecular Weight (calculated)

33396.1 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.377

Length

294 amino acids

Sequence
(BLAST)

001: MNDLLSGLFS KGKQEEHVIE ITEGGGIMEL EKFLEEVESV KEDLKELERL HLSLDATNQN GKALHSPKGV RELRSRMDLD VALSLTKAKH VKGRLAALHR
101: ANQATLSLPD CGPGSYSDRT RTALVGALTK NLRQSMASFN KLREQISYEY RDTVQRRYYA VTGENPDQET IDLLISTGES ETFLQKAIQQ QGRASVMDTI
201: QEIRERHGTM KEIERSLHEL HQVFMDMAVL IQHQGEHLDD IESHVELANS FVSKGVQHLQ VVRNHQKNTR NFTCFAVLLF IIVLVIILPI VFRN

Best Arabidopsis Sequence Match ( AT1G11250.1 )
(BLAST)

001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK

Arabidopsis Description

SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.