Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61210.1 | CDX98070 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY15993 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26558 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY26559 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | CDY30074 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012978.1-P | Field mustard | nucleus | 97.06 | 97.38 |
| CDY23079 | Canola | nucleus | 93.46 | 94.08 |
| AT5G61210.1 | Thale cress | nucleus | 86.27 | 88.0 |
| CDY42860 | Canola | cytosol, plastid | 79.41 | 87.1 |
| CDY47025 | Canola | nucleus, plastid | 76.14 | 83.81 |
| CDX78314 | Canola | cytosol | 68.3 | 71.33 |
| CDX73442 | Canola | nucleus | 44.12 | 65.22 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 64.05 | 64.05 |
| KRH56857 | Soybean | nucleus | 62.75 | 64.0 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 63.73 | 63.93 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 63.73 | 63.73 |
| PGSC0003DMT400083166 | Potato | nucleus | 63.4 | 63.4 |
| KRH03094 | Soybean | cytosol | 61.44 | 62.67 |
| KRH63266 | Soybean | nucleus | 58.17 | 61.17 |
| KRH54642 | Soybean | nucleus | 58.17 | 60.96 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 69.61 | 60.86 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 67.65 | 60.53 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 48.69 | 60.08 |
| CDY33792 | Canola | cytosol | 50.65 | 58.27 |
| CDY16118 | Canola | cytosol | 50.65 | 58.27 |
| CDX81075 | Canola | nucleus | 18.95 | 58.0 |
| Solyc03g115470.2.1 | Tomato | nucleus | 64.71 | 57.73 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 50.65 | 56.16 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 49.35 | 51.89 |
| Zm00001d019505_P001 | Maize | nucleus | 47.39 | 51.06 |
| KXG34983 | Sorghum | nucleus, plastid | 47.39 | 50.0 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 49.67 | 49.84 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 50.33 | 49.2 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 35.29 | 45.0 |
| Os02t0437200-01 | Rice | plasma membrane | 21.57 | 44.3 |
Protein Annotations
| EnsemblPlants:CDY02165 | EnsemblPlantsGene:GSBRNA2T00113567001 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | ProteinID:CDY02165 | ProteinID:CDY02165.1 | SEG:seg |
| SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0004EE4D45 | MapMan:22.7.3.1 | : | : |
Description
BnaA03g40020D
Coordinates
chrLK031932:-:465937..467750
Molecular Weight (calculated)
34350.1 Da
IEP (calculated)
7.874
GRAVY (calculated)
-1.107
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGLRKSPAK LPKHNSADPG FHKSSKPNPF DSDDELDNNK HTLNPSKRTS SEPSLADMSP NPFDGEDKVE KGFTSSSKQS LTSNSRYQYK NNFRDSGGVE
101: NQSVQELEGY AVYKAEETTK SVQGCLKVAE DIRSDATRTL VMLHEQGEQI TRTHHQAVEI DHDLSRGEKL LGSLGGMFSK TWKPKKTRPI NGPVITRDHS
201: PTRRINHLEK REKLGLNPAP KGQSRSREPL PESADAYQRV EMEKAKQDDG LSDLSDLLGE LKNMAVDMGS EIEKQNKGLD HLQDDVDELN FRVQQSNQRG
301: RRLLGK
101: NQSVQELEGY AVYKAEETTK SVQGCLKVAE DIRSDATRTL VMLHEQGEQI TRTHHQAVEI DHDLSRGEKL LGSLGGMFSK TWKPKKTRPI NGPVITRDHS
201: PTRRINHLEK REKLGLNPAP KGQSRSREPL PESADAYQRV EMEKAKQDDG LSDLSDLLGE LKNMAVDMGS EIEKQNKGLD HLQDDVDELN FRVQQSNQRG
301: RRLLGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.