Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 91.41 | 84.98 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 87.63 | 83.61 |
| Zm00001d019505_P001 | Maize | nucleus | 71.13 | 72.89 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 57.73 | 70.0 |
| KXG34983 | Sorghum | nucleus, plastid | 69.42 | 69.66 |
| Os02t0437200-01 | Rice | plasma membrane | 32.3 | 63.09 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 53.26 | 62.5 |
| Bra026875.1-P | Field mustard | cytosol | 30.93 | 54.88 |
| TraesCS2A01G181400.1 | Wheat | plastid | 49.14 | 54.37 |
| KRH63266 | Soybean | nucleus | 52.58 | 52.58 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 49.83 | 52.54 |
| KRH56857 | Soybean | nucleus | 53.95 | 52.33 |
| KRH54642 | Soybean | nucleus | 51.55 | 51.37 |
| TraesCS3A01G391300.1 | Wheat | cytosol | 44.33 | 50.39 |
| CDY47025 | Canola | nucleus, plastid | 48.11 | 50.36 |
| CDX73442 | Canola | nucleus | 35.74 | 50.24 |
| AT1G13890.2 | Thale cress | nucleus | 45.36 | 50.19 |
| CDY42860 | Canola | cytosol, plastid | 48.11 | 50.18 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 52.58 | 50.16 |
| AT5G61210.1 | Thale cress | nucleus | 51.55 | 50.0 |
| KRH03094 | Soybean | cytosol | 51.55 | 50.0 |
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 52.23 | 49.67 |
| CDY02165 | Canola | nucleus | 51.89 | 49.35 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 49.83 | 49.32 |
| Bra012978.1-P | Field mustard | nucleus | 51.55 | 49.18 |
| PGSC0003DMT400083166 | Potato | nucleus | 51.2 | 48.69 |
| CDY23079 | Canola | nucleus | 50.86 | 48.68 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 50.86 | 48.37 |
| Bra005958.1-P | Field mustard | cytosol | 48.45 | 48.29 |
| AT5G07880.1 | Thale cress | nucleus | 41.24 | 47.81 |
| CDX78314 | Canola | cytosol | 48.11 | 47.78 |
| TraesCS2A01G180800.1 | Wheat | nucleus, plastid | 42.96 | 47.71 |
| VIT_01s0011g00670.t01 | Wine grape | cytosol | 45.7 | 47.5 |
| KRH70869 | Soybean | cytosol | 45.36 | 47.14 |
| CDY33792 | Canola | cytosol | 42.96 | 46.99 |
| CDY16118 | Canola | cytosol | 42.96 | 46.99 |
| KRH75005 | Soybean | cytosol | 44.67 | 46.43 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 39.18 | 45.78 |
| Solyc05g012520.2.1 | Tomato | nucleus | 38.83 | 45.56 |
| Solyc03g115470.2.1 | Tomato | nucleus | 52.23 | 44.31 |
| PGSC0003DMT400072798 | Potato | cytosol | 40.21 | 44.15 |
| CDX81075 | Canola | nucleus | 14.78 | 43.0 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 46.39 | 39.47 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 45.36 | 37.71 |
| Bra013246.1-P | Field mustard | cytosol | 37.46 | 35.86 |
| Bra032989.1-P | Field mustard | nucleus | 39.86 | 30.29 |
| Bra009311.1-P | Field mustard | plastid | 46.39 | 13.26 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G049300.1 | EnsemblPlantsGene:TraesCS7A01G049300 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 |
| PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | TIGR:cd15841 |
| TIGR:cd15861 | MapMan:22.7.3.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:22961980..22963857
Molecular Weight (calculated)
32135.3 Da
IEP (calculated)
7.667
GRAVY (calculated)
-0.889
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAARSSFFA SNNAKKNPFD SDSDSDDDGG MVQRRASSVP TPADERNSLF ATDPAPSGFA SSSSSSSAAA ARRRYGSDFR DSGGVEAQSV QELEGYAAYK
101: AEETTRRVDG CLRVAEEMRD TASKTLLQVH QQGQQIRRTH AMALDIDQDL SRGEKLLGDL GGLFSKKWKP KKNGAIRGPM LTRDDSFIRK GSHMEQRHKL
201: GLSDRPRRSN ARQFLSEPTS ELEKVEVEKA KQDDGLSDLS DILTELKGMA IDMGTEIEGQ TKDLGYAEKD FDELNYRVKG ANTRTRRLLG R
101: AEETTRRVDG CLRVAEEMRD TASKTLLQVH QQGQQIRRTH AMALDIDQDL SRGEKLLGDL GGLFSKKWKP KKNGAIRGPM LTRDDSFIRK GSHMEQRHKL
201: GLSDRPRRSN ARQFLSEPTS ELEKVEVEKA KQDDGLSDLS DILTELKGMA IDMGTEIEGQ TKDLGYAEKD FDELNYRVKG ANTRTRRLLG R
001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K
Arabidopsis Description
SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.