Factsheet for AT5G07880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78314	Canola	cytosol	68.13	58.36
CDX73442	Canola	nucleus	47.81	57.97
Bra005958.1-P	Field mustard	cytosol	67.33	57.88
CDX81075	Canola	nucleus	20.72	52.0
AT5G61210.1	Thale cress	nucleus	59.36	49.67
CDX69988	Canola	endoplasmic reticulum, extracellular	66.93	49.12
CDX99033	Canola	endoplasmic reticulum, extracellular	68.13	48.86
GSMUA_Achr4P23350_001	Banana	nucleus	48.21	48.79
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	56.97	46.73
KRH56857	Soybean	nucleus	55.78	46.67
AT1G13890.2	Thale cress	nucleus	48.21	46.01
Bra013246.1-P	Field mustard	cytosol	54.98	45.39
KRH03094	Soybean	cytosol	54.18	45.33
KRH54642	Soybean	nucleus	52.19	44.86
Solyc06g069570.2.1	Tomato	nucleus, plastid	54.58	44.77
GSMUA_Achr5P01680_001	Banana	cytosol	49.0	44.57
VIT_17s0000g06860.t01	Wine grape	nucleus	53.78	44.26
PGSC0003DMT400083166	Potato	nucleus	53.78	44.12
KRH63266	Soybean	nucleus	51.0	43.99
Zm00001d019505_P001	Maize	nucleus	47.01	41.55
TraesCS7A01G049300.1	Wheat	nucleus, plastid	47.81	41.24
Solyc03g115470.2.1	Tomato	nucleus	56.18	41.11
KXG34983	Sorghum	nucleus, plastid	46.22	40.0
TraesCS7D01G044400.1	Wheat	nucleus, plastid	47.81	39.34
TraesCS4A01G435200.1	Wheat	cytosol, plastid	48.21	38.66
Bra032989.1-P	Field mustard	nucleus	57.37	37.6
Os02t0437200-01	Rice	plasma membrane	21.51	36.24
HORVU7Hr1G008760.1	Barley	nucleus, plastid	33.07	34.58
Bra009311.1-P	Field mustard	plastid	66.93	16.5

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.3.1	EntrezGene:830681	ProteinID:AED91215.1	ProteinID:ANM69266.1	ArrayExpress:AT5G07880
EnsemblPlantsGene:AT5G07880	RefSeq:AT5G07880	TAIR:AT5G07880	RefSeq:AT5G07880-TAIR-G	EnsemblPlants:AT5G07880.1	TAIR:AT5G07880.1
Unigene:At.54772	ProteinID:BAB09952.1	ProteinID:CAB62600.1	ncoils:Coil	EMBL:DQ056673	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	RefSeq:NP_001318503.1
RefSeq:NP_196405.1	PO:PO:0000084	PO:PO:0000293	PFscan:PS50192	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7
UniProt:Q9SD96	SMART:SM00397	Symbol:SNAP29	SUPFAM:SSF58038	InterPro:T_SNARE_dom	UniParc:UPI0000135AFF
SEG:seg	:	:	:	:	:

Description

SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]

Coordinates

chr5:-:2515219..2517066

Molecular Weight (calculated)

28309.3 Da

IEP (calculated)

8.198

GRAVY (calculated)

-0.933

Length

251 amino acids

Sequence
(BLAST)

001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.