CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX98070
CDY15993
CDY26558
CDY26559
CDY30074

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	CDX98070	AT1G12360.1	11591731
AT5G07880.1	CDY15993	AT1G12360.1	11591731
AT5G07880.1	CDY26558	AT1G12360.1	11591731
AT5G07880.1	CDY26559	AT1G12360.1	11591731
AT5G07880.1	CDY30074	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81075	Canola	nucleus	29.47	61.0
Bra013246.1-P	Field mustard	cytosol	83.57	56.91
CDX78314	Canola	cytosol	70.05	49.49
CDY42860	Canola	cytosol, plastid	65.7	48.75
AT5G07880.1	Thale cress	nucleus	57.97	47.81
CDY47025	Canola	nucleus, plastid	63.28	47.12
CDX99033	Canola	endoplasmic reticulum, extracellular	78.74	46.57
CDX69988	Canola	endoplasmic reticulum, extracellular	75.85	45.91
CDY23079	Canola	nucleus	65.22	44.41
CDY02165	Canola	nucleus	65.22	44.12
GSMUA_Achr4P23350_001	Banana	nucleus	51.69	43.15
Solyc06g069570.2.1	Tomato	nucleus, plastid	60.39	40.85
PGSC0003DMT400083166	Potato	nucleus	58.94	39.87
KRH03094	Soybean	cytosol	57.0	39.33
KRH56857	Soybean	nucleus	56.04	38.67
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	56.04	37.91
KRH54642	Soybean	nucleus	53.14	37.67
KRH63266	Soybean	nucleus	52.17	37.11
VIT_17s0000g06860.t01	Wine grape	nucleus	53.14	36.07
GSMUA_Achr5P01680_001	Banana	cytosol	47.83	35.87
TraesCS7A01G049300.1	Wheat	nucleus, plastid	50.24	35.74
CDY33792	Canola	cytosol	45.89	35.71
CDY16118	Canola	cytosol	45.89	35.71
Zm00001d019505_P001	Maize	nucleus	47.83	34.86
TraesCS7D01G044400.1	Wheat	nucleus, plastid	50.72	34.43
Solyc03g115470.2.1	Tomato	nucleus	57.0	34.4
KXG34983	Sorghum	nucleus, plastid	47.83	34.14
TraesCS4A01G435200.1	Wheat	cytosol, plastid	50.24	33.23
HORVU7Hr1G008760.1	Barley	nucleus, plastid	34.3	29.58
Os02t0437200-01	Rice	plasma membrane	18.84	26.17

Protein Annotations

EnsemblPlants:CDX73442	EnsemblPlantsGene:GSBRNA2T00108943001	Gene3D:1.20.5.110	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	ProteinID:CDX73442
ProteinID:CDX73442.1	SEG:seg	SUPFAM:SSF58038	UniParc:UPI0004EE14C9	MapMan:22.7.3.1	:

Description

BnaC08g25610D

Coordinates

chrLK031799:-:384050..386181

Molecular Weight (calculated)

23312.6 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.795

Length

207 amino acids

Sequence
(BLAST)

001: MKSYTVTKKA ENHFRESGGV ENQTVQELES YAVYKSEETT KTVPGISSAR DKISLSSKQG EKITRTHHKA VDIDHDLTRG EKLLGSLGGI FSRTWKPKKT
101: RSITGPVITR EGESPKRRVN NLETREKLGL NQLPKPDSRT NEPLPESADA YQKIEMEKAK QDDGLADLSD LLGELKNMAI DMGTEIERFS FISLNYCTYI
201: FSMSIPR

Best Arabidopsis Sequence Match ( AT1G13890.2 )
(BLAST)

001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK

Arabidopsis Description

SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.