Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g079520.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G07880.1 | Solyc08g079520.2.1 | AT1G12360.1 | 11591731 |
| AT5G61210.1 | Solyc08g079520.2.1 | AT1G12360.1 | 11591731 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063113 | Potato | mitochondrion, nucleus | 82.8 | 92.81 |
| Solyc06g069570.2.1 | Tomato | nucleus, plastid | 67.64 | 75.82 |
| KRH56857 | Soybean | nucleus | 60.06 | 68.67 |
| VIT_17s0000g06860.t01 | Wine grape | nucleus | 60.93 | 68.52 |
| KRH03094 | Soybean | cytosol | 58.89 | 67.33 |
| GSMUA_Achr4P23350_001 | Banana | nucleus | 47.81 | 66.13 |
| KRH63266 | Soybean | nucleus | 55.1 | 64.95 |
| CDY02165 | Canola | nucleus | 57.73 | 64.71 |
| Bra012978.1-P | Field mustard | nucleus | 57.14 | 64.26 |
| CDY23079 | Canola | nucleus | 56.85 | 64.14 |
| KRH54642 | Soybean | nucleus | 54.52 | 64.04 |
| CDY42860 | Canola | cytosol, plastid | 51.31 | 63.08 |
| AT5G61210.1 | Thale cress | nucleus | 55.1 | 63.0 |
| Bra029328.1-P | Field mustard | nucleus, plastid | 52.48 | 61.22 |
| Bra005958.1-P | Field mustard | cytosol | 51.9 | 60.96 |
| CDY47025 | Canola | nucleus, plastid | 49.27 | 60.79 |
| CDX78314 | Canola | cytosol | 51.6 | 60.41 |
| GSMUA_Achr5P01680_001 | Banana | cytosol | 46.06 | 57.25 |
| CDX73442 | Canola | nucleus | 34.4 | 57.0 |
| AT5G07880.1 | Thale cress | nucleus | 41.11 | 56.18 |
| Zm00001d019505_P001 | Maize | nucleus | 44.9 | 54.23 |
| Solyc05g012520.2.1 | Tomato | nucleus | 37.9 | 52.42 |
| KXG34983 | Sorghum | nucleus, plastid | 44.31 | 52.41 |
| TraesCS7A01G049300.1 | Wheat | nucleus, plastid | 44.31 | 52.23 |
| CDX69988 | Canola | endoplasmic reticulum, extracellular | 51.9 | 52.05 |
| CDX99033 | Canola | endoplasmic reticulum, extracellular | 52.77 | 51.71 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 44.31 | 49.84 |
| TraesCS4A01G435200.1 | Wheat | cytosol, plastid | 44.61 | 48.88 |
| CDX81075 | Canola | nucleus | 13.7 | 47.0 |
| Os02t0437200-01 | Rice | plasma membrane | 19.53 | 44.97 |
| Bra013246.1-P | Field mustard | cytosol | 37.9 | 42.76 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 29.45 | 42.08 |
| Bra032989.1-P | Field mustard | nucleus | 44.02 | 39.43 |
| Bra009311.1-P | Field mustard | plastid | 52.19 | 17.58 |
Protein Annotations
| EnsemblPlants:Solyc03g115470.2.1 | EnsemblPlantsGene:Solyc03g115470.2 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 |
| SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0002768960 | UniProt:K4BL49 | MapMan:22.7.3.1 |
Description
No Description!
Coordinates
chr3:+:65165216..65168981
Molecular Weight (calculated)
38506.4 Da
IEP (calculated)
7.957
GRAVY (calculated)
-1.099
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGLKKSPLH RNARNHSVNP GSGGYSSSNP FDSDNESDNK ETIKPARTPL HRNARNHSVN PGFGGYPSSN PFDSDNKETI KPVRRTSSEP SPVTPHLSTN
101: TFDDDDDIKQ THSSAYSVTS TERNKYKNEF RDSGGFENQT VQELENYAVH KAEETTKSVN NCLRIAEDIR QDATKTVITL HQQGEQITRT HLTAADIDHD
201: LSRSEKLLGT LGGFFSKSWK PKKTRSITGP VITRDDPVQR RGNHLEQREK LGLNSAPKER SSSRTLPQEP TNALQKVEVE HAKQDDALSD LSNLLGELKH
301: MAIDMGSEIE RQNRSLDHFQ DDVDELNFRV KGANQRGRRL LGK
101: TFDDDDDIKQ THSSAYSVTS TERNKYKNEF RDSGGFENQT VQELENYAVH KAEETTKSVN NCLRIAEDIR QDATKTVITL HQQGEQITRT HLTAADIDHD
201: LSRSEKLLGT LGGFFSKSWK PKKTRSITGP VITRDDPVQR RGNHLEQREK LGLNSAPKER SSSRTLPQEP TNALQKVEVE HAKQDDALSD LSNLLGELKH
301: MAIDMGSEIE RQNRSLDHFQ DDVDELNFRV KGANQRGRRL LGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.