CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX98070
CDY15993
CDY26558
CDY26559
CDY30074

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07880.1	CDX98070	AT1G12360.1	11591731
AT5G07880.1	CDY15993	AT1G12360.1	11591731
AT5G07880.1	CDY26558	AT1G12360.1	11591731
AT5G07880.1	CDY26559	AT1G12360.1	11591731
AT5G07880.1	CDY30074	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69988	Canola	endoplasmic reticulum, extracellular	77.71	79.53
CDX73442	Canola	nucleus	46.57	78.74
CDX78314	Canola	cytosol	64.86	77.47
CDY42860	Canola	cytosol, plastid	58.29	73.12
CDY02165	Canola	nucleus	60.86	69.61
CDY47025	Canola	nucleus, plastid	55.14	69.42
CDY23079	Canola	nucleus	60.29	69.41
AT5G07880.1	Thale cress	nucleus	48.86	68.13
CDX81075	Canola	nucleus	18.57	65.0
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	52.29	59.8
Solyc06g069570.2.1	Tomato	nucleus, plastid	51.43	58.82
KRH56857	Soybean	nucleus	50.0	58.33
PGSC0003DMT400083166	Potato	nucleus	50.86	58.17
GSMUA_Achr4P23350_001	Banana	nucleus	40.86	57.66
KRH03094	Soybean	cytosol	49.14	57.33
VIT_17s0000g06860.t01	Wine grape	nucleus	48.29	55.41
KRH54642	Soybean	nucleus	45.43	54.45
KRH63266	Soybean	nucleus	44.86	53.95
Solyc03g115470.2.1	Tomato	nucleus	51.71	52.77
CDY33792	Canola	cytosol	39.43	51.88
CDY16118	Canola	cytosol	39.43	51.88
GSMUA_Achr5P01680_001	Banana	cytosol	40.57	51.45
Zm00001d019505_P001	Maize	nucleus	37.71	46.48
TraesCS7A01G049300.1	Wheat	nucleus, plastid	37.71	45.36
TraesCS7D01G044400.1	Wheat	nucleus, plastid	39.43	45.25
KXG34983	Sorghum	nucleus, plastid	37.14	44.83
TraesCS4A01G435200.1	Wheat	cytosol, plastid	39.14	43.77
Os02t0437200-01	Rice	plasma membrane	16.29	38.26
HORVU7Hr1G008760.1	Barley	nucleus, plastid	25.14	36.67

Protein Annotations

EnsemblPlants:CDX99033	EnsemblPlantsGene:GSBRNA2T00107162001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:CDX99033	ProteinID:CDX99033.1	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0004EEB39A	MapMan:22.7.3.1	:	:

Description

BnaC09g48020D

Coordinates

chrLK031907:-:1236431..1238583

Molecular Weight (calculated)

39761.3 Da

IEP (calculated)

9.693

GRAVY (calculated)

-0.773

Length

350 amino acids

Sequence
(BLAST)

001: MVFRMATARV CLEVSLNSFV AIQNFKFFGV LLLLSLGSLI QERVFFRVWI TMFDLKKPLE RLSKHHKPSS ASASNSNPFD SDDESDVNNK KHTLKPSNKI
101: SPQPSLPTKK NHSFNPFDDE EEEVVEKRLK PSFKNHSRDS GGVENQTVQE LESYAVYKSE ETTKTVQGCL KVAQGIRSDA TRTLVMLNEQ GEKITRTHHK
201: AVDIDHDLSR GEKLLGSLGG IFSRTWKPKK TRSITGPVIT RGESPKRRVN NLETREKLGL NHLPKPQSRT NEPLPESADA YQKIEMEKAK QDDGLADLSD
301: LLGELKNMAI DMGTEIERQN NGLDHLQDDV DELNFRVKQS NQRARRLLRK

Best Arabidopsis Sequence Match ( AT5G07880.1 )
(BLAST)

001: MAPKNSSWNP FDDEKEAAKS FSLNPFDDDD DDKEVEKRFT SSLKPSGGKE NQTVQELESY AVYNSEETTK TVQGCLKVAE EIRCDASKTL VMLNEQGDQI
101: TRTHQKTVDL DHHLSRGEKI LGRLGGVFSR TWKPKKSRSI TGPVITKGDS PKRKVIDLKT REKLGLNPSL KPKSKTLPEA VDAYQKTQIA KQDEALTDLS
201: ALLGELKNMA VDMGTAIERQ TNELDHLQDN ADELNYRVKQ SNQRARYLLR K

Arabidopsis Description

SNAP29SNAP25 homologous protein SNAP29 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.