CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70869	Soybean	cytosol	93.21	93.21
Bra026875.1-P	Field mustard	cytosol	41.07	70.12
AT1G13890.2	Thale cress	nucleus	62.86	66.92
CDY16118	Canola	cytosol	62.5	65.79
CDY33792	Canola	cytosol	62.5	65.79
VIT_01s0011g00670.t01	Wine grape	cytosol	58.93	58.93
PGSC0003DMT400072798	Potato	cytosol	54.64	57.74
Solyc05g012520.2.1	Tomato	nucleus	50.0	56.45
GSMUA_Achr4P23350_001	Banana	nucleus	48.21	54.44
KRH56857	Soybean	nucleus	56.43	52.67
KRH63266	Soybean	nucleus	54.29	52.23
KRH54642	Soybean	nucleus	54.29	52.05
KRH03094	Soybean	cytosol	54.64	51.0
GSMUA_Achr5P01680_001	Banana	cytosol	48.21	48.91
Zm00001d019505_P001	Maize	nucleus	45.36	44.72
TraesCS7A01G049300.1	Wheat	nucleus, plastid	46.43	44.67
KXG34983	Sorghum	nucleus, plastid	44.64	43.1
TraesCS4A01G435200.1	Wheat	cytosol, plastid	47.14	42.17
TraesCS7D01G044400.1	Wheat	nucleus, plastid	45.71	41.97
Os02t0437200-01	Rice	plasma membrane	19.64	36.91
HORVU7Hr1G008760.1	Barley	nucleus, plastid	31.07	36.25

Protein Annotations

EMBL:ACUP02000105	EnsemblPlants:KRH75005	EnsemblPlantsGene:GLYMA_01G056500	EntrezGene:100804448	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:KRH75005	ProteinID:KRH75005.1	SMART:SM00397
SUPFAM:SSF58038	UniParc:UPI0002337414	UniProt:I1J5Y3	MapMan:22.7.3.1	:	:

Description

hypothetical protein

Coordinates

chr1:-:7305811..7309451

Molecular Weight (calculated)

31202.4 Da

IEP (calculated)

7.652

GRAVY (calculated)

-1.071

Length

280 amino acids

Sequence
(BLAST)

001: MFGFRKTPAP TESDKKTTLT AEKRTASEPV LPVPKSKGNY FDYDDDDWGR KPSSSTASKD KDRYKNGFSN SGGLENQSVQ ELENYAVYKS EETTKSVNNC
101: LRIAEDIRGD ATRTLDMLHQ QGEQITRTHN MVVDTEKDLS RGEKLLNNLG GMFSKPWKPK KTREIQGPII TPDKPSKKNV HSKEDREKLG LAPLPKGRSA
201: PTTPPNESSD AYQKVDYEKA KQDDALEDLS DILGDLKGMA ISMGSELDKQ NKALDHLADD VDELNSRVKG ANQRARKLVG

Best Arabidopsis Sequence Match ( AT1G13890.2 )
(BLAST)

001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK

Arabidopsis Description

SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.