Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- vacuole 1
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028197_P001 | Maize | plastid | 84.08 | 84.77 |
| TraesCS4B01G249000.1 | Wheat | cytosol, plastid | 64.49 | 63.45 |
| Os03t0212400-01 | Rice | cytosol | 62.86 | 63.11 |
| TraesCS4D01G249100.1 | Wheat | cytosol, plastid | 63.67 | 62.65 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 63.27 | 62.25 |
| HORVU4Hr1G068540.1 | Barley | cytosol, plastid | 61.63 | 60.64 |
| EES05172 | Sorghum | cytosol | 47.35 | 44.44 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.78 | 44.23 |
| KXG34983 | Sorghum | nucleus, plastid | 43.27 | 36.55 |
Protein Annotations
| EnsemblPlants:EER95289 | EnsemblPlantsGene:SORBI_3001G459100 | EntrezGene:8054205 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF13 |
| PFscan:PS50192 | ProteinID:EER95289 | ProteinID:EER95289.1 | RefSeq:XP_002468291.1 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | unigene:Sbi.5495 | UniParc:UPI0001A83456 | UniProt:C5WTM4 | MapMan:22.7.3.1 | : |
Description
hypothetical protein
Coordinates
chr1:-:73504343..73507214
Molecular Weight (calculated)
27208.0 Da
IEP (calculated)
7.218
GRAVY (calculated)
-0.762
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVPMYKKQN SLSTPVHKTN PFDSDSDSEG PSRAQSVPVR HTNQSVQELE DYAITKARET THKVNDCVRA AEAIREDATQ TMLTLHHQGE QIMRSHQVAA
101: EIEQDLTVSE KLLGSLGGLF SKSWRPKRSQ QIKGPVSGNN FSATTANDTE QRWKLGIVPA RQERPSHVQT TPVSAMEKIQ AETAKQDDAL SDLCSTLGQL
201: KEMAVDMGAE IDRQNKALVP FSDDVDELNF RLKGANQRGR RLLGK
101: EIEQDLTVSE KLLGSLGGLF SKSWRPKRSQ QIKGPVSGNN FSATTANDTE QRWKLGIVPA RQERPSHVQT TPVSAMEKIQ AETAKQDDAL SDLCSTLGQL
201: KEMAVDMGAE IDRQNKALVP FSDDVDELNF RLKGANQRGR RLLGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.