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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 2
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G055800.1 Wheat cytosol, plastid 89.56 89.56
TraesCS4D01G249100.1 Wheat cytosol, plastid 83.53 83.53
TraesCS4B01G249000.1 Wheat cytosol, plastid 82.33 82.33
Os03t0212400-01 Rice cytosol 67.07 68.44
Zm00001d028197_P001 Maize plastid 61.85 63.37
EER95289 Sorghum cytosol 60.64 61.63
HORVU3Hr1G088590.6 Barley cytosol 47.39 44.87
GSMUA_AchrUn_... Banana cytosol 17.27 41.35
HORVU2Hr1G034110.1 Barley plastid 50.2 40.19
HORVU7Hr1G008760.1 Barley nucleus, plastid 30.52 31.67
Protein Annotations
EnsemblPlants:HORVU4Hr1G068540.1EnsemblPlantsGene:HORVU4Hr1G068540Gene3D:1.20.5.110InterPro:IPR000727InterPro:T_SNARE_domPANTHER:PTHR19305
PANTHER:PTHR19305:SF13PFscan:PS50192SEG:segSMART:SM00397SUPFAM:SSF58038UniParc:UPI000296BC59
UniProt:M0VKM3MapMan:22.7.3.1::::
Description
No Description!
Coordinates
chrchr4H:-:565993558..565997207
Molecular Weight (calculated)
27748.5 Da
IEP (calculated)
7.240
GRAVY (calculated)
-0.863
Length
249 amino acids
Sequence
(BLAST)
001: MSVSMNMRQN TVSTPIRRTT NPFDSDSDTE VPSRPLRAQS APTQHTNQSV QELEDYTLRK AEETSSKVND CVRAAEAIRE DATQILLTLH RQGEQITHTH
101: RVAADIEHDL TMSEKLLGSL GGLFSKTWRP KRNQHIKGPV SENSSFKSTS NEMEQRQKLG IASTPQKSPS SVHSAPATEM DKVKAEKARQ DDAFADLSNI
201: LGGLKDMALD MGTEIDRQNK SLDTFSDDVD ELNFRVKGAN QRGRRLLGK
Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.