Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95289 | Sorghum | cytosol | 84.77 | 84.08 |
| Os03t0212400-01 | Rice | cytosol | 67.9 | 67.62 |
| TraesCS4B01G249000.1 | Wheat | cytosol, plastid | 67.9 | 66.27 |
| TraesCS4D01G249100.1 | Wheat | cytosol, plastid | 67.08 | 65.46 |
| HORVU4Hr1G068540.1 | Barley | cytosol, plastid | 63.37 | 61.85 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 63.37 | 61.85 |
| Zm00001d016686_P003 | Maize | nucleus | 48.56 | 45.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.93 | 44.23 |
| Zm00001d019505_P001 | Maize | nucleus | 45.68 | 39.08 |
Protein Annotations
| EMBL:BT068043 | EnsemblPlants:Zm00001d028197_P001 | EnsemblPlants:Zm00001d028197_T001 | EnsemblPlantsGene:Zm00001d028197 | EntrezGene:100193037 | Gene3D:1.20.5.110 |
| InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF13 | PFscan:PS50192 | ProteinID:ONL94964.1 |
| SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI000195CDD6 | UniProt:C0PIC4 | MapMan:22.7.3.1 |
Description
SNAP25 homologous protein SNAP33
Coordinates
chr1:-:25933439..25936325
Molecular Weight (calculated)
26934.7 Da
IEP (calculated)
8.692
GRAVY (calculated)
-0.829
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVPMYNKQN SLGTPPPHKT NPFSDSEGPS RAQSVPVRRT NQSVQELEDY AITKARETTH KVNDCVRAAE AIREDATQTM LTLHRQGEQI MRSHQVAADI
101: EQDLTVSEKL LGSLGGLFSK SWRPKRNHQI KGPVSGNNYS ATTANDTEQR GKLGIAPARQ EYPSHVQTTP VSAMEKVQAE RTKQDDALSD LCSTLGQLKE
201: MAVDMGTEID RQNKALVPLS DDVDELNFRL KGANQRGRRL LGK
101: EQDLTVSEKL LGSLGGLFSK SWRPKRNHQI KGPVSGNNYS ATTANDTEQR GKLGIAPARQ EYPSHVQTTP VSAMEKVQAE RTKQDDALSD LCSTLGQLKE
201: MAVDMGTEID RQNKALVPLS DDVDELNFRL KGANQRGRRL LGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.