Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G249000.1 | Wheat | cytosol, plastid | 76.64 | 75.1 |
| TraesCS4D01G249100.1 | Wheat | cytosol, plastid | 76.23 | 74.7 |
| Zm00001d028197_P001 | Maize | plastid | 67.62 | 67.9 |
| HORVU4Hr1G068540.1 | Barley | cytosol, plastid | 68.44 | 67.07 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 68.03 | 66.67 |
| EER95289 | Sorghum | cytosol | 63.11 | 62.86 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.67 | 46.15 |
| Os02t0529500-01 | Rice | plasma membrane | 48.77 | 45.95 |
| Os02t0437200-01 | Rice | plasma membrane | 18.03 | 29.53 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.3.1 | EntrezGene:4332038 | ProteinID:ABF94609.1 | ProteinID:ABF94610.1 | EMBL:AK102778 |
| ProteinID:BAS82928.1 | ncoils:Coil | ProteinID:EEE58572.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:IPR000727 | EnsemblPlantsGene:Os03g0212400 | EnsemblPlants:Os03t0212400-01 | PFscan:PS50192 | PANTHER:PTHR19305 |
| PANTHER:PTHR19305:SF13 | UniProt:Q10Q25 | SMART:SM00397 | SUPFAM:SSF58038 | InterPro:T_SNARE_dom | UniParc:UPI0000DB4526 |
| RefSeq:XP_015628615.1 | RefSeq:XP_015628616.1 | SEG:seg | : | : | : |
Description
Similar to SNAP25 homologous protein SNAP29. (Os03t0212400-01)
Coordinates
chr3:+:5860717..5863891
Molecular Weight (calculated)
27272.0 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.880
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKKQTSLGT PVYRTNPFDS DSDSEVPSRP SRAQSVPVRR TDQSIQELED YAVDKVEETS RKVNDCVRAA EAIREDATKT LVTLHRQGEQ ITRTHRVAAD
101: IEHDLSMSEK LLGSLGGLFS KTWKPKRNQQ IKGPISQNNS FTSSANHMEQ RQRLGISSTR QPSPNQVHRS PATAIEKVQV EIAKQDDALS DLSNMLGELK
201: GMALDMGTEI ERQNKSLDAF GDDVDELNFR VKGANQRGRR LLGK
101: IEHDLSMSEK LLGSLGGLFS KTWKPKRNQQ IKGPISQNNS FTSSANHMEQ RQRLGISSTR QPSPNQVHRS PATAIEKVQV EIAKQDDALS DLSNMLGELK
201: GMALDMGTEI ERQNKSLDAF GDDVDELNFR VKGANQRGRR LLGK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.