Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G249000.1 | Wheat | cytosol, plastid | 97.19 | 97.19 |
| TraesCS4A01G055800.1 | Wheat | cytosol, plastid | 86.75 | 86.75 |
| HORVU4Hr1G068540.1 | Barley | cytosol, plastid | 83.53 | 83.53 |
| Os03t0212400-01 | Rice | cytosol | 74.7 | 76.23 |
| Zm00001d028197_P001 | Maize | plastid | 65.46 | 67.08 |
| EER95289 | Sorghum | cytosol | 62.65 | 63.67 |
| TraesCS3D01G384300.1 | Wheat | cytosol | 43.78 | 42.58 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.67 | 42.31 |
| TraesCS7D01G044400.1 | Wheat | nucleus, plastid | 44.18 | 36.07 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G249100.1 | EnsemblPlantsGene:TraesCS4D01G249100 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR19305 |
| PANTHER:PTHR19305:SF13 | PFscan:PS50192 | SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 | TIGR:cd15841 |
| MapMan:22.7.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:418388368..418391361
Molecular Weight (calculated)
27694.3 Da
IEP (calculated)
8.521
GRAVY (calculated)
-0.922
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSMNMRQN SVSTPIRRTT NPFDSDSDSE VPSRPSRAQS APTQHTNQSV QELEDYTLRK AEETSSKAND CVRAAEAIRE DATQILLTLH RQGEQITHTH
101: RVAADIEHDL TMSEKLLGSL GGLFSKTWRP KRNQHIKGPV SQNSSFKSTS NQMEQRQNLG IGSRPQQSPS SAHSAPATAM DKIKAEKARQ DDAFADLSNM
201: LGNLKDMALD MGTEIDRQNK SLDTFSDDVD ELNFRVKGAN QRGRRLLGK
101: RVAADIEHDL TMSEKLLGSL GGLFSKTWRP KRNQHIKGPV SQNSSFKSTS NQMEQRQNLG IGSRPQQSPS SAHSAPATAM DKIKAEKARQ DDAFADLSNM
201: LGNLKDMALD MGTEIDRQNK SLDTFSDDVD ELNFRVKGAN QRGRRLLGK
001: MFGFFKSPGN NKLPNESSNN KGGTITAGRR TSSEPILITP DFDDDDKYKN GFNDSGGLQS QTTEELEKYA VYKAEETTKG VNNCLKIAED IRSDGARTLE
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
101: MLHQQGEQIN RTHEMAVDMD KDLSRGEKLL NNLGGMFSKP WKPKKTKNIT GPMITPDKPS KKSENHKEER EKLGLGAKGR SSSQPALDQP TNALQKVEQE
201: KAKQDDGLSD LSDILGDLKS MAVDMGSEID KQNKALDHLG DDVDELNSRV QGANQRARHL LSK
Arabidopsis Description
SNAP30Putative SNAP25 homologous protein SNAP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.