Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016686_P003 | Maize | nucleus | 75.29 | 74.43 |
| EES05172 | Sorghum | cytosol | 74.52 | 73.95 |
| TraesCS3A01G391300.1 | Wheat | cytosol | 69.88 | 70.7 |
| TraesCS3D01G384300.1 | Wheat | cytosol | 69.88 | 70.7 |
| TraesCS3B01G423500.1 | Wheat | cytosol | 69.5 | 70.31 |
| HORVU3Hr1G088590.6 | Barley | cytosol | 71.04 | 69.96 |
| GSMUA_Achr6P24620_001 | Banana | nucleus | 66.41 | 64.66 |
| Os03t0212400-01 | Rice | cytosol | 45.95 | 48.77 |
| Os02t0437200-01 | Rice | plasma membrane | 25.1 | 43.62 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.3.1 | EntrezGene:4329538 | EMBL:AK069978 | ProteinID:BAD25433.1 | ProteinID:BAF08927.1 |
| ProteinID:BAS79019.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| InterPro:IPR000727 | EnsemblPlantsGene:Os02g0529500 | EnsemblPlants:Os02t0529500-01 | PFscan:PS50192 | PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 |
| UniProt:Q6H766 | SMART:SM00397 | SUPFAM:SSF58038 | InterPro:T_SNARE_dom | UniParc:UPI00003B447E | RefSeq:XP_015624805.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to SNAP25-like protein C (Fragment). (Os02t0529500-01)
Coordinates
chr2:+:19444035..19446413
Molecular Weight (calculated)
28142.8 Da
IEP (calculated)
7.503
GRAVY (calculated)
-0.908
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVSRGGKAA SSKADPFDSD SDSDLVPKKK PGAYTAPSGA AKARYKDDFR DSGGLEQQSV QELENYAAYK AEETTDALGG CLRIAENIRE DAANTLVTLN
101: KQGQQISRTH EKAVEIDQDL SKGESLLGSL GGFFSKPWKP KKTRQIKGPA HVSDDSFKKK ASHIEQREKL GLSPSGKSAN RSYAEPTTAM EKVQVEKQKQ
201: DDALDDLSGV LGQLKGMACD MGSELDRQNK ALDDLQGDVD ELNSRVKGAN QRARKLIEK
101: KQGQQISRTH EKAVEIDQDL SKGESLLGSL GGFFSKPWKP KKTRQIKGPA HVSDDSFKKK ASHIEQREKL GLSPSGKSAN RSYAEPTTAM EKVQVEKQKQ
201: DDALDDLSGV LGQLKGMACD MGSELDRQNK ALDDLQGDVD ELNSRVKGAN QRARKLIEK
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.