Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G423500.1 | Wheat | cytosol | 87.07 | 89.45 |
| TraesCS3D01G384300.1 | Wheat | cytosol | 86.31 | 88.67 |
| TraesCS3A01G391300.1 | Wheat | cytosol | 84.79 | 87.11 |
| Zm00001d016686_P003 | Maize | nucleus | 73.38 | 73.66 |
| EES05172 | Sorghum | cytosol | 71.86 | 72.41 |
| Os02t0529500-01 | Rice | plasma membrane | 69.96 | 71.04 |
| GSMUA_Achr6P24620_001 | Banana | nucleus | 60.08 | 59.4 |
| HORVU4Hr1G068540.1 | Barley | cytosol, plastid | 44.87 | 47.39 |
| HORVU2Hr1G034110.1 | Barley | plastid | 53.61 | 45.34 |
| HORVU7Hr1G008760.1 | Barley | nucleus, plastid | 35.74 | 39.17 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G088590.6 | EnsemblPlantsGene:HORVU3Hr1G088590 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19305 | PANTHER:PTHR19305:SF7 | PFscan:PS50192 | SEG:seg | SMART:SM00397 | SUPFAM:SSF58038 |
| UniParc:UPI000B46D3F2 | UniProt:A0A287M5F7 | MapMan:22.7.3.1 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:625307015..625308239
Molecular Weight (calculated)
28864.9 Da
IEP (calculated)
8.874
GRAVY (calculated)
-1.000
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVAKGGKAS SKPDPFDSDS DDGLVSSKPA KKSSAYSVPG GNKKQYQDGF KNSGGLENQS VEELEHYAAY KAEETTDTLN GCLRIAENIR EDATSTMITL
101: QKQGEQISRT HEKAVEIDQD LTKGEGLLNS LGGFFSKPWK PKKTKKIKGP VSRGTDDSFK KKVNRMEQRD KLGLSPRGKG NTREYGEAGT AMDKVQVRLE
201: KKKQDDALDD LSGVLGQLQG MAVDMGSELD RQNKALDDMH GDVEELNSRV KQANQRARKI IAE
101: QKQGEQISRT HEKAVEIDQD LTKGEGLLNS LGGFFSKPWK PKKTKKIKGP VSRGTDDSFK KKVNRMEQRD KLGLSPRGKG NTREYGEAGT AMDKVQVRLE
201: KKKQDDALDD LSGVLGQLQG MAVDMGSELD RQNKALDDMH GDVEELNSRV KQANQRARKI IAE
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
Arabidopsis Description
SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.