CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86629
CDX89818
CDX90556
CDX92209
CDX95551
CDY09730
CDY15510
CDY18239
CDY18500
CDY24431
CDY24603

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	CDX86629	AT1G04510.1	19629177
AT1G09770.1	CDX89818	AT1G04510.1	19629177
AT1G09770.1	CDY15510	AT1G04510.1	19629177
AT1G09770.1	CDY18239	AT1G04510.1	19629177
AT1G09770.1	CDX92209	AT3G18165.1	17575050
AT1G09770.1	CDX95551	AT3G18165.1	17575050
AT1G09770.1	CDY18500	AT3G18165.1	17575050
AT1G09770.1	CDY24431	AT3G18165.1	17575050
AT1G09770.1	CDY24603	AT3G18165.1	17575050
AT1G09770.1	CDX90556	AT4G15900.1	17575050
AT1G09770.1	CDY09730	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31065	Canola	nucleus	96.81	96.81
CDX94951	Canola	nucleus	92.44	92.66
CDX93482	Canola	nucleus	91.97	92.19
AT1G09770.1	Thale cress	nucleus	90.08	90.4
CDY47227	Canola	nucleus	23.49	84.32
CDY53058	Canola	nucleus	23.02	82.63
KRG92639	Soybean	nucleus	72.85	64.07
KRH34143	Soybean	nucleus	72.25	63.62
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	69.19	63.35
Os04t0348300-01	Rice	nucleus	69.66	60.7
KXG34025	Sorghum	nucleus	69.78	60.12
EES15997	Sorghum	nucleus	69.78	59.94
PGSC0003DMT400029953	Potato	nucleus	69.66	59.84
Solyc04g009950.2.1	Tomato	nucleus	69.54	59.68
TraesCS5D01G460800.1	Wheat	nucleus	69.42	58.05
VIT_14s0036g00510.t01	Wine grape	nucleus	67.3	57.69
TraesCS5B01G459200.1	Wheat	nucleus	69.42	57.48
TraesCS5A01G450800.1	Wheat	nucleus	69.07	57.02
HORVU5Hr1G108630.3	Barley	nucleus	69.66	55.77
TraesCS5D01G314000.1	Wheat	nucleus	69.42	55.52
HORVU5Hr1G080010.3	Barley	nucleus	69.78	55.23
TraesCS5A01G307100.1	Wheat	nucleus	69.54	54.49
TraesCS5B01G307500.2	Wheat	nucleus	69.66	54.43
GSMUA_Achr9P23340_001	Banana	nucleus	70.25	52.8
CDY53404	Canola	nucleus	4.49	28.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	GO:A0A078G7S4	UniProt:A0A078G7S4
EnsemblPlants:CDY20673	ProteinID:CDY20673	ProteinID:CDY20673.1	InterPro:Cdc5p/Cef1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00012860001	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE7BBE	SEG:seg	:

Description

BnaC08g13850DBnaC08g13850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7S4]

Coordinates

chrLK032110:-:603962..607229

Molecular Weight (calculated)

95775.7 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.952

Length

847 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ESYEAADDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIGNSHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEDLEGRRR ADVEAQLRRQ DVARNKIAER RDAPAAILQA NKMNDPEAVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPSM TPGGAGLTPR LGLTPSRDGS SFAMTPRGTP FRDELHINED MDMHESAKLE GQRREEARRS LRTGLTGLPQ PRNEYQIVAQ
501: PPPEESEEQE EKIEEDMSDK IAREKAEEEA RQQALLRKRS KVLQRDLPRP PAASLELIKN SLLSANGDKS SVVPPTPEEV ADKLVRRELL QLLEHDNAKY
601: PLDGKAEKKK GAKNRANSSG SQVTPIEDFE ENDLEEADKM IKEEGKFLCK AMGNENKTLE DFVKAHDDCV KDLMYFPTRN AYGPSSVAVK AEKVAALQVE
701: MENARKKMEE DEKKAEHMKA KYKTYTKGHE KRAETVWSQI EASLKQIEIG GTEVECFKAL KRQEEMAASF RKKNLEEEVV KQKETERKLQ ASYGELLSTL
801: EKAEEIMVGF RVQALKQADV EDSHNLKEAK LATGEEEDVA ISTEASS

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.