Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92209 | Canola | nucleus | 98.81 | 98.81 |
| CDX95551 | Canola | cytosol | 92.49 | 92.49 |
| AT3G18165.1 | Thale cress | cytosol | 90.51 | 90.51 |
| CDY24603 | Canola | cytosol | 28.06 | 80.68 |
| Solyc03g119010.2.1 | Tomato | nucleus | 62.45 | 65.83 |
| PGSC0003DMT400014424 | Potato | nucleus | 64.82 | 65.34 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 61.26 | 61.26 |
| KRH41788 | Soybean | nucleus | 59.68 | 59.92 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 48.62 | 59.42 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 32.41 | 57.34 |
| EES00531 | Sorghum | cytosol | 53.75 | 53.54 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 54.15 | 53.52 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 53.36 | 52.73 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 53.36 | 52.73 |
| HORVU3Hr1G037080.1 | Barley | plastid | 53.36 | 45.3 |
| CDY18500 | Canola | cytosol | 93.68 | 39.57 |
| Zm00001d040357_P001 | Maize | cytosol | 54.55 | 38.23 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 26.09 | 32.67 |
Protein Annotations
| EnsemblPlants:CDY24431 | EnsemblPlantsGene:GSBRNA2T00026684001 | GO:A0A078GGD0 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | ncoils:Coil | PANTHER:PTHR13296 | PFAM:PF05700 |
| ProteinID:CDY24431 | ProteinID:CDY24431.1 | UniParc:UPI0004EE4095 | UniProt:A0A078GGD0 | MapMan:16.4.5.1.1 | : |
Description
BnaC05g35230DBnaC05g35230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGD0]
Coordinates
chrLK032159:+:337..2267
Molecular Weight (calculated)
29540.1 Da
IEP (calculated)
5.325
GRAVY (calculated)
-0.904
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNNGEVLM LEAAPEATKP WASAANAEVI DALPYIDDDY GNPLIKAEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFE NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKHE LPPASKKNDD AAWKQYLHKT QRSLQQKMIE LENLEMMSKQ GPEIWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTAYELNA
201: LSQEWRQLCV KNMEIQSACA VLETQIDSLK REASERGWNL EEKLESVKPL QSQ
101: IDFESRYKHE LPPASKKNDD AAWKQYLHKT QRSLQQKMIE LENLEMMSKQ GPEIWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTAYELNA
201: LSQEWRQLCV KNMEIQSACA VLETQIDSLK REASERGWNL EEKLESVKPL QSQ
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.