Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G186100.1 | Wheat | cytosol | 98.44 | 98.44 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 98.44 | 98.44 |
| HORVU3Hr1G037080.1 | Barley | plastid | 97.27 | 83.56 |
| EES00531 | Sorghum | cytosol | 79.69 | 80.31 |
| Solyc03g119010.2.1 | Tomato | nucleus | 55.86 | 59.58 |
| PGSC0003DMT400014424 | Potato | nucleus | 55.86 | 56.97 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 55.86 | 56.52 |
| Zm00001d040357_P001 | Maize | cytosol | 78.91 | 55.96 |
| KRH41788 | Soybean | nucleus | 55.08 | 55.95 |
| AT3G18165.1 | Thale cress | cytosol | 54.3 | 54.94 |
| CDX95551 | Canola | cytosol | 54.3 | 54.94 |
| Bra022288.1-P | Field mustard | nucleus | 53.91 | 54.55 |
| CDX92209 | Canola | nucleus | 53.91 | 54.55 |
| Bra021297.1-P | Field mustard | cytosol | 53.52 | 54.15 |
| CDY24431 | Canola | nucleus | 53.52 | 54.15 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 43.36 | 53.62 |
| CDY24603 | Canola | cytosol | 17.19 | 50.0 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 33.98 | 43.07 |
| CDY18500 | Canola | cytosol | 53.52 | 22.87 |
Protein Annotations
| MapMan:16.4.5.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009870 | GO:GO:0009987 |
| GO:GO:0010204 | GO:GO:0042742 | GO:GO:0050832 | PFAM:PF05700 | PANTHER:PTHR13296 | InterPro:SPF27 |
| EnsemblPlantsGene:TraesCS3A01G181200 | EnsemblPlants:TraesCS3A01G181200.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:209402060..209406783
Molecular Weight (calculated)
29085.9 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.659
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSATREVL MLEAPPSEAA GVPWRPPPDA ETVDALPYID GDYGDPAVKR EVDRLVEEEM RRAHRKPADF LRDLPPVPII GFENHPMLAK EYERVRAGKP
101: PATIEMSRYG LEPPPANKRN DVVAWRQALR NAQSQLQHQI VRIENLELML KHGVEVWKLQ NRKMESVLSR TQKMTLEYNE KIETVNRERK FHQQNTGGQL
201: HALTVEWQEL CQKNMAIQAA CVDLQNQIDL LKLEAKEQGM PMAGSNETNP QASVGI
101: PATIEMSRYG LEPPPANKRN DVVAWRQALR NAQSQLQHQI VRIENLELML KHGVEVWKLQ NRKMESVLSR TQKMTLEYNE KIETVNRERK FHQQNTGGQL
201: HALTVEWQEL CQKNMAIQAA CVDLQNQIDL LKLEAKEQGM PMAGSNETNP QASVGI
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.