Factsheet for TraesCS5B01G277100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	88.67	71.98
HORVU5Hr1G075030.1	Barley	nucleus	88.14	69.36
TraesCS7B01G276500.1	Wheat	cytosol	86.9	68.29
EER93674	Sorghum	cytosol	83.01	64.96
EES19533	Sorghum	cytosol	82.65	64.86
Os05t0289400-01	Rice	nucleus	82.12	64.18
Zm00001d013548_P002	Maize	mitochondrion	67.61	63.24
Zm00001d033388_P001	Maize	cytosol	83.19	60.57
CDY16320	Canola	cytosol, mitochondrion	20.71	60.31
Os06t0523900-00	Rice	cytosol, plastid	74.51	60.23
CDX89268	Canola	cytosol	13.1	58.73
GSMUA_Achr1P00740_001	Banana	cytosol	59.65	57.22
CDY38549	Canola	extracellular	7.96	55.56
CDY51192	Canola	cytosol	14.16	55.17
CDY49874	Canola	mitochondrion	13.81	54.55
CDX67505	Canola	nucleus	63.54	53.82
Solyc12g056080.1.1	Tomato	nucleus	65.84	53.68
PGSC0003DMT400012873	Potato	cytosol	65.84	53.68
CDY49876	Canola	nucleus	63.36	53.67
KRH27855	Soybean	nucleus	65.84	53.53
KRH77629	Soybean	nucleus	65.84	53.53
VIT_02s0025g01160.t01	Wine grape	cytosol	66.55	53.49
CDY27682	Canola	nucleus	63.01	53.37
PGSC0003DMT400016837	Potato	mitochondrion	24.42	53.08
CDY35016	Canola	nucleus	63.72	52.86
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	39.65	52.71
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	61.42	52.1
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	61.06	51.96
Solyc03g007850.1.1	Tomato	mitochondrion	61.42	51.56
AT3G13210.1	Thale cress	nucleus	59.47	51.14
Bra028504.1-P	Field mustard	nucleus	63.89	51.13
PGSC0003DMT400024585	Potato	cytosol	55.58	50.97
AT5G41770.1	Thale cress	nucleus	63.54	50.92
Bra025462.1-P	Field mustard	nucleus	63.54	50.85
AT5G45990.2	Thale cress	nucleus	61.24	50.66
Solyc10g050500.1.1	Tomato	cytosol	5.84	47.83
CDX94039	Canola	nucleus	54.16	47.74
Bra031930.1-P	Field mustard	cytosol	55.58	47.08
CDY63724	Canola	plastid	54.34	47.01
AT3G51110.1	Thale cress	cytosol	34.34	46.97
CDY31331	Canola	cytosol, nucleus, plastid	52.74	46.2
CDY14715	Canola	cytosol	15.4	41.23
Bra038885.1-P	Field mustard	nucleus	20.89	37.11
PGSC0003DMT400041076	Potato	nucleus	13.1	36.27
PGSC0003DMT400015907	Potato	cytosol	10.97	34.25
Bra023285.1-P	Field mustard	mitochondrion	9.91	34.15
CDX93820	Canola	cytosol	10.09	30.48
CDY16319	Canola	nucleus	0.35	2.3

Protein Annotations

EnsemblPlants:TraesCS5B01G277100.1	EnsemblPlantsGene:TraesCS5B01G277100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	PFAM:PF02184	SEG:seg
SMART:SM00386	SUPFAM:SSF48452	MapMan:16.4.5.2.6	:	:	:

Description

No Description!

Coordinates

chr5B:-:462729571..462743756

Molecular Weight (calculated)

67378.2 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.660

Length

565 amino acids

Sequence
(BLAST)

001: MRSRCVNHAR NVCDRAVSLL PRVDQLWHKY IHMEELLGAI ANARLLFERW MGWRPDIAAW SSYIKFELRY GEVERARAIY ERFVTEHPRP DTFVRYAKFE
101: MKHGGVERAR RVYEHASEQL VDDEDVEVVF VAFAEFEEQR REVERARAIY KYALDRVPKG KAEDLYRKFL AFEKRFGDRE GIEEAIVGKQ RFQYEDDVRK
201: NPLNYDSWFD YIRLEESAGN KDRIRDVYER AIANVPPAQE KRYWQTYIYL WINYALYEEL DAQDMERTGE VYRACLKLIP HKKVTFAKLW LMAAQFEIRQ
301: KNMKAARRIL GNAIGMVPKG KLFKEYIEIE LHLGSFDRCR TLYEKYIDWS PANCYAWRKY AELEKNLHEA DRARSVYELG IAQPSLDTPE VLWKEYLQFE
401: IDEGEFGRAR ELYERLLDRT KHLKVWISYA EFEASAGLAE DNGSEEQQIE RVRMCRAVFE RAFDYFRTNA AELKEERAML LEEWLKKELG FGDLGDVALV
501: QKKAPRKVKR KRPLPTDDGS KIAYEGYVDY IFPDEVTPAS NLKILEAAYN WKERRLFDRH VEFHN

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.