CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	52.26	78.82
CDY35016	Canola	nucleus	79.1	74.45
CDX67505	Canola	nucleus	76.6	73.61
AT5G45990.2	Thale cress	nucleus	78.32	73.5
CDY49874	Canola	mitochondrion	16.38	73.43
CDY49876	Canola	nucleus	76.13	73.16
CDY27682	Canola	nucleus	75.97	73.01
AT3G13210.1	Thale cress	nucleus	72.39	70.62
CDX89268	Canola	cytosol	13.42	68.25
CDY38549	Canola	extracellular	8.27	65.43
CDY51192	Canola	cytosol	14.66	64.83
CDY63724	Canola	plastid	62.09	60.95
CDY31331	Canola	cytosol, nucleus, plastid	59.59	59.22
CDY16319	Canola	nucleus	7.96	58.62
EES19533	Sorghum	cytosol	64.74	57.64
EER93674	Sorghum	cytosol	64.9	57.62
Os05t0289400-01	Rice	nucleus	64.59	57.26
TraesCS7D01G371400.1	Wheat	cytosol	63.96	57.02
TraesCS7B01G276500.1	Wheat	cytosol	63.96	57.02
TraesCS7A01G351600.1	Wheat	nucleus	63.81	56.88
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	58.97	54.31
Zm00001d013548_P002	Maize	mitochondrion	51.17	54.3
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	47.74	54.16
CDY16320	Canola	cytosol, mitochondrion	16.22	53.61
Zm00001d033388_P001	Maize	cytosol	64.74	53.48
HORVU7Hr1G089610.1	Barley	nucleus, plastid	63.81	51.58
HORVU5Hr1G075030.1	Barley	nucleus	55.69	49.72
Os06t0523900-00	Rice	cytosol, plastid	53.67	49.21
CDY14715	Canola	cytosol	14.82	45.02
Os10t0328700-01	Rice	mitochondrion	38.69	34.88
CDX93820	Canola	cytosol	9.67	33.16
GSMUA_Achr5P12800_001	Banana	nucleus	3.74	12.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:A0A078E055	EnsemblPlants:CDX94039	ProteinID:CDX94039	ProteinID:CDX94039.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00156928001	InterPro:HAT	InterPro:IPR011990
PFAM:PF02184	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EF0DC9	SEG:seg	:	:	:	:

Description

BnaC07g36730D

Coordinates

chrLK031879:-:262350..265026

Molecular Weight (calculated)

76059.9 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.754

Length

641 amino acids

Sequence
(BLAST)

001: MSSDKVSSDR TLAYMPRKDT EVRLPRTTRV KNKTPVAVQI TAEQILREAR ERQEAEIRPP KQKITDATEL SDYRLRSRKE FEDQIRRARW NVQVWVKYAH
101: VWERALEGDY RNHTVWIKYA ENVWDRAVTL LPRVDQLWYK YAHMENMLGN VAGARHVFER WMNWSPDQEG WLCYINFELK FNEFERARSI YERFVLCHPT
201: VSAYIRYAKF EMERGQVELA RKVYERASEL LGGDGEEEEE EAETLYERAE ALYEKFVAFE KRYGGKEGIE DALVGKKRFE YEDEVGKNPL NYDSWFDYLR
301: LEEEEGFTGN KDRIREIYER AVANVPPAED KRFWQRSIYL WINYALYEEI ETKDVERARD VYSACLKLIP HNKFSFAKIW LLAAQFEIRQ LNLTGARQIL
401: GNAIGKAPKD KIFKKYIEME LQLANADRCR KLYERYLEWS PENCFAWRSY AEFEMSLSEN DRARAIFELA ISQPALDMPE LLWKTYIDFE ISEKELERTR
501: ALYERLLDRT KHYKVWVSFA KFEASATEHK GEGDKEEVAI ETKKDCIRRA RDSAHKEERA TLLEDWANME AGFGSFGDVS VVQSLLPKKL KKRKAISRED
601: GSTEYQEYTD YLFPDESLTT ANLKILEAAH RWKKQKAGEC V

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.