CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38549	Canola	extracellular	50.0	77.78
CDY49874	Canola	mitochondrion	60.32	53.15
CDY51192	Canola	cytosol	60.32	52.41
CDY14715	Canola	cytosol	38.1	22.75
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	70.63	20.94
CDX67505	Canola	nucleus	80.95	15.29
CDY49876	Canola	nucleus	80.95	15.29
CDY27682	Canola	nucleus	80.95	15.29
CDY35016	Canola	nucleus	80.95	14.98
KRH77629	Soybean	nucleus	74.6	13.53
KRH27855	Soybean	nucleus	74.6	13.53
VIT_02s0025g01160.t01	Wine grape	cytosol	75.4	13.51
CDX94039	Canola	nucleus	68.25	13.42
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	58.73	13.1
CDY31331	Canola	cytosol, nucleus, plastid	62.7	12.25
CDY63724	Canola	plastid	62.7	12.1
Os06t0523900-00	Rice	cytosol, plastid	65.87	11.87
Os05t0289400-01	Rice	nucleus	66.67	11.62
EES19533	Sorghum	cytosol	65.87	11.53
EER93674	Sorghum	cytosol	65.87	11.5
TraesCS7B01G276500.1	Wheat	cytosol	64.29	11.27
TraesCS7A01G351600.1	Wheat	nucleus	64.29	11.27
TraesCS7D01G371400.1	Wheat	cytosol	64.29	11.27
Zm00001d033388_P001	Maize	cytosol	65.87	10.7
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	58.73	10.63
HORVU5Hr1G075030.1	Barley	nucleus	60.32	10.59
HORVU7Hr1G089610.1	Barley	nucleus, plastid	64.29	10.21
Zm00001d013548_P002	Maize	mitochondrion	40.48	8.44
Os10t0328700-01	Rice	mitochondrion	38.89	6.89
GSMUA_Achr5P12800_001	Banana	nucleus	4.76	3.0
CDX93820	Canola	cytosol	2.38	1.6
CDY16320	Canola	cytosol, mitochondrion	0.0	0.0
CDY16319	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX89268	EnsemblPlantsGene:GSBRNA2T00149479001	Gene3D:1.25.40.10	GO:A0A078DPX6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:HAT	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	ProteinID:CDX89268
ProteinID:CDX89268.1	SMART:SM00386	SUPFAM:SSF48452	UniParc:UPI0004EDDF12	MapMan:35.2	:

Description

BnaA01g16250D

Coordinates

chrLK031858:+:630781..633353

Molecular Weight (calculated)

15329.2 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.632

Length

126 amino acids

Sequence
(BLAST)

001: MLEETVGNKY RIREIYEMAI ANIPSPEEKR YWQTHIYLWI NYALYKEIKT EDVERTRDIF KNYIEIELQL GNIDRCRKLY ELYLEWSPEN CYAWSKYAEL
101: ERSLDETELA RTTFELAISQ PALDMP

Best Arabidopsis Sequence Match ( AT3G13210.1 )
(BLAST)

001: MASGKDSDRN LGYMTRKDAE LKLPRMTQVK NKTPAPIQIT AEQILREARE RQEAEFRPPN QTITDSAELS DYRLRRRKEF EDQIRRARLN TQVWVKYADF
101: EMKNKSVNEA RNVWDRAVSL LPRVDQLWYK FIHMEEKLGN IAGARQILER WIHCSPDQQA WLCFIKFELK YNEIECARSI YERFVLCHPK VSAYIRYAKF
201: EMKHGQVELA MKVFERAKKE LADDEEAEIL FVAFAEFEEQ YKFALDQIPK GRAENLYSKF VAFEKQNGDK EGIEDAIIGK RRCQYEDEVR KNPLNYDSWF
301: DFVRLEETVG NKDRIREIYE RAVANVPPPE AQEKRYWQRY IYLWINYAFF AEMVTEDVES TRDVYRACLK LIPHSKFSFA KIWLLAAQHE IRQLNLTGAR
401: QILGNAIGKA PKDKIFKKYI EIELQLRNID RCRKLYERYL EWSPGNCYAW RKYAEFEMSL AETERTRAIF ELAISQPALD MPELLWKTYI DFEISEGELE
501: RTRALYERLL DRTKHCKVWV DFAKFEASAA EHKEDEEEED AIERKKDGIK RAREIFDRAN TYNKDSTPEL KEERAMLLED WLNMETGFGK LGDVRVVQSK
601: LPKKVKKRKL SSREDGCTEY EEYTDYLFPE ESETTSLKIL EAAHKWKKQK VKAGECV

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JC74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.