CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67505	Canola	nucleus	63.22	8.25
CDY49876	Canola	nucleus	63.22	8.25
CDY27682	Canola	nucleus	63.22	8.25
CDY63724	Canola	plastid	60.92	8.12
CDY35016	Canola	nucleus	63.22	8.08
CDY31331	Canola	cytosol, nucleus, plastid	59.77	8.06
CDX94039	Canola	nucleus	58.62	7.96
VIT_02s0025g01160.t01	Wine grape	cytosol	59.77	7.4
Os05t0289400-01	Rice	nucleus	59.77	7.19
KRH77629	Soybean	nucleus	56.32	7.05
KRH27855	Soybean	nucleus	56.32	7.05
EER93674	Sorghum	cytosol	57.47	6.93
TraesCS7D01G371400.1	Wheat	cytosol	56.32	6.82
TraesCS7B01G276500.1	Wheat	cytosol	56.32	6.82
TraesCS7A01G351600.1	Wheat	nucleus	56.32	6.82
EES19533	Sorghum	cytosol	56.32	6.81
Zm00001d013548_P002	Maize	mitochondrion	47.13	6.79
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	51.72	6.47
Zm00001d033388_P001	Maize	cytosol	57.47	6.44
HORVU7Hr1G089610.1	Barley	nucleus, plastid	56.32	6.18
Os06t0523900-00	Rice	cytosol, plastid	40.23	5.01
Os10t0328700-01	Rice	mitochondrion	40.23	4.92
CDX93820	Canola	cytosol	8.05	3.74
HORVU5Hr1G075030.1	Barley	nucleus	29.89	3.62
GSMUA_Achr5P12800_001	Banana	nucleus	6.9	3.0
CDY14715	Canola	cytosol	4.6	1.9
CDY16320	Canola	cytosol, mitochondrion	2.3	1.03
CDY51192	Canola	cytosol	1.15	0.69
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	2.3	0.47
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	2.3	0.35
PGSC0003DMT400041076	Potato	nucleus	0.0	0.0
Solyc10g050500.1.1	Tomato	cytosol	0.0	0.0
CDY49874	Canola	mitochondrion	0.0	0.0
CDY38549	Canola	extracellular	0.0	0.0
CDX89268	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY16319	EnsemblPlantsGene:GSBRNA2T00090832001	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	ProteinID:CDY16319	ProteinID:CDY16319.1
SEG:seg	UniParc:UPI0004EDF633	UniProt:A0A078FTQ9	MapMan:35.2	:	:

Description

BnaC01g23540DBnaC01g23540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTQ9]

Coordinates

chrLK032062:+:712480..712801

Molecular Weight (calculated)

10086.0 Da

IEP (calculated)

9.397

GRAVY (calculated)

-1.057

Length

87 amino acids

Sequence
(BLAST)

1: MVSVCEKDSK LPRPTRVKNK SPAAVQITAE QLLREARERQ EPEVLPSEHS ITDSTELSDY RLRRRKEFED RSHRRITRVL GACGNEP

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.