CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27855	Soybean	nucleus	98.56	98.56
Solyc12g056080.1.1	Tomato	nucleus	85.18	85.43
PGSC0003DMT400012873	Potato	cytosol	85.04	85.28
VIT_02s0025g01160.t01	Wine grape	cytosol	86.19	85.21
PGSC0003DMT400024585	Potato	cytosol	71.51	80.68
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	76.83	80.18
Solyc03g007850.1.1	Tomato	mitochondrion	75.68	78.16
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	73.53	76.96
CDX89268	Canola	cytosol	13.53	74.6
EES19533	Sorghum	cytosol	75.54	72.92
EER93674	Sorghum	cytosol	75.54	72.71
TraesCS7A01G351600.1	Wheat	nucleus	73.09	70.65
TraesCS7B01G276500.1	Wheat	cytosol	73.09	70.65
TraesCS7D01G371400.1	Wheat	cytosol	73.09	70.65
Os05t0289400-01	Rice	nucleus	73.24	70.4
Zm00001d013548_P002	Maize	mitochondrion	60.29	69.37
PGSC0003DMT400016837	Potato	mitochondrion	25.9	69.23
Zm00001d033388_P001	Maize	cytosol	75.4	67.53
PGSC0003DMT400015907	Potato	cytosol	17.55	67.4
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	53.53	65.84
Solyc10g050500.1.1	Tomato	cytosol	6.47	65.22
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	65.18	65.09
HORVU7Hr1G089610.1	Barley	nucleus, plastid	73.09	64.06
HORVU5Hr1G075030.1	Barley	nucleus	63.6	61.56
Os06t0523900-00	Rice	cytosol, plastid	60.29	59.94
CDY16319	Canola	nucleus	7.05	56.32
CDY14715	Canola	cytosol	14.39	47.39
PGSC0003DMT400041076	Potato	nucleus	13.53	46.08
Bra023285.1-P	Field mustard	mitochondrion	10.5	44.51
Os10t0328700-01	Rice	mitochondrion	42.45	41.49
CDX93820	Canola	cytosol	11.08	41.18
GSMUA_Achr5P12800_001	Banana	nucleus	6.76	23.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100811745	MapMan:16.4.5.2.6	EMBL:ACUP02000681	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G224300
GO:GO:0000245	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071011	GO:GO:0071012
GO:GO:0071013	GO:GO:0071014	InterPro:HAT	UniProt:I1JAC1	InterPro:IPR011990	InterPro:IPR013026
EnsemblPlants:KRH77629	ProteinID:KRH77629	ProteinID:KRH77629.1	PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246
PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023376F2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55323685..55328691

Molecular Weight (calculated)

83246.1 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.783

Length

695 amino acids

Sequence
(BLAST)

001: MSSSKDADPS LGYLTRKDTE VKLPRPTRVK NKTPAPIQIT AEQILREARE RQEAEIRPPK QKITDPTELG EYRLRKRKEF EDLIRRVRWN IGVWIKYAQW
101: EESQKDFKRA RSVWERALEV DYKNHTLWLK YAEVEMKNKF INHARNVWDR AVTLLPRVDQ LWYKYIHMEE MLGNVAGARQ VFERWMKWTP DQQGWLSYIK
201: FELRYNEIER ARGIFERFVE CHPRVGAWIR YAKFEMKNGE VVRSRNVYER AVDKLSDDEE AEQLFVAFAE FEERCKETER ARAIYKFALD HIPKGRAEDL
301: YRKFVAFEKQ YGDREGIEDA IVGKRRFQYE DEVKKNPLNY DSWFDYIRLE ESVGDKERIR EVYERAIANV PPAEEKRYWQ RYIYLWINYA LYEELDAGDM
401: ERTRDVYKEC LNQIPHQKFS FAKIWLLAAQ FEIRQLNLRA ARQILGNAIG KAPKDKIFKK YIEIELQLGN IDRCRKLYEK YLEWSPENCY AWSKYAELER
501: SLSETDRARA IFELAIAQPA LDMPELLWKA YINFETAEGE FERARALYER LLDRTKHLKV WISYAEFEAT AMAMDNLDLT EEEQKKQCIQ SARRVFEKAL
601: NYFRSSAPDL KEERAMLLEK WLNMEATSGE LGDVSLVQSK LPKKLKKRRH VATEDGSTRI EEFIDYLFPE ESQTTNLKIL EAAYKWKKQK LSSDD

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.