CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38549	Canola	extracellular	18.48	48.15
CDY51192	Canola	cytosol	32.7	47.59
CDY49874	Canola	mitochondrion	26.07	38.46
CDX89268	Canola	cytosol	22.75	38.1
CDX93820	Canola	cytosol	24.64	27.81
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	41.23	20.47
CDY27682	Canola	nucleus	54.03	17.09
CDY49876	Canola	nucleus	53.55	16.94
CDX67505	Canola	nucleus	53.55	16.94
CDY35016	Canola	nucleus	54.03	16.74
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	41.23	15.4
CDX94039	Canola	nucleus	45.02	14.82
VIT_02s0025g01160.t01	Wine grape	cytosol	48.82	14.65
KRH77629	Soybean	nucleus	47.39	14.39
KRH27855	Soybean	nucleus	47.39	14.39
Zm00001d013548_P002	Maize	mitochondrion	39.81	13.91
CDY31331	Canola	cytosol, nucleus, plastid	42.18	13.8
Os06t0523900-00	Rice	cytosol, plastid	45.5	13.73
Os05t0289400-01	Rice	nucleus	46.92	13.69
EES19533	Sorghum	cytosol	46.45	13.61
EER93674	Sorghum	cytosol	46.45	13.57
TraesCS7A01G351600.1	Wheat	nucleus	45.97	13.49
TraesCS7B01G276500.1	Wheat	cytosol	45.97	13.49
TraesCS7D01G371400.1	Wheat	cytosol	45.97	13.49
CDY63724	Canola	plastid	41.71	13.48
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	41.71	12.64
Zm00001d033388_P001	Maize	cytosol	46.45	12.63
HORVU5Hr1G075030.1	Barley	nucleus	42.65	12.53
HORVU7Hr1G089610.1	Barley	nucleus, plastid	45.97	12.23
CDY16320	Canola	cytosol, mitochondrion	10.43	11.34
Os10t0328700-01	Rice	mitochondrion	27.49	8.16
CDY16319	Canola	nucleus	1.9	4.6
GSMUA_Achr5P12800_001	Banana	nucleus	4.27	4.5

Protein Annotations

EnsemblPlants:CDY14715	EnsemblPlantsGene:GSBRNA2T00084526001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	ProteinID:CDY14715	ProteinID:CDY14715.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EF0118	UniProt:A0A078FJW4	MapMan:35.2	:

Description

BnaC05g19720DBnaC05g19720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJW4]

Coordinates

chrLK032046:-:497291..499203

Molecular Weight (calculated)

25232.8 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.821

Length

211 amino acids

Sequence
(BLAST)

001: MYERTTEKLA DDEEAETLLW RLLSLKSNAR SRNYGGKEEI EDATAGKRRF QYEDEVRKNP LNYDSWFDYV RLEEPWGTKI GILLECWVHG LRKMLIILRI
101: RRVNYALYGE TETEDVYRKS PKKDKWSTEN CYAWRKYAEL ERSLAETERS RVIFELAISQ PALDIPELLW KEDQEEIDAI ELKKECIRRV RAIFERATSY
201: YKDSAPELKE A

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.