Factsheet for TraesCS7A01G351600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26228564
nucleus: 28628250

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G276500.1	Wheat	cytosol	99.44	99.44
TraesCS7D01G371400.1	Wheat	cytosol	99.17	99.17
HORVU7Hr1G089610.1	Barley	nucleus, plastid	99.17	89.91
EER93674	Sorghum	cytosol	89.99	89.61
EES19533	Sorghum	cytosol	89.15	89.03
Os05t0289400-01	Rice	nucleus	88.32	87.83
Zm00001d013548_P002	Maize	mitochondrion	70.93	84.44
Zm00001d033388_P001	Maize	cytosol	89.57	82.99
GSMUA_Achr1P00740_001	Banana	cytosol	62.45	76.23
Os06t0523900-00	Rice	cytosol, plastid	72.74	74.82
Solyc12g056080.1.1	Tomato	nucleus	70.51	73.16
PGSC0003DMT400012873	Potato	cytosol	70.51	73.16
VIT_02s0025g01160.t01	Wine grape	cytosol	71.49	73.12
KRH77629	Soybean	nucleus	70.65	73.09
KRH27855	Soybean	nucleus	70.65	73.09
AT5G41770.1	Thale cress	nucleus	68.98	70.35
CDY49876	Canola	nucleus	65.09	70.16
CDX67505	Canola	nucleus	64.95	70.02
CDY35016	Canola	nucleus	66.2	69.9
CDY27682	Canola	nucleus	64.81	69.87
Bra028504.1-P	Field mustard	nucleus	68.57	69.83
Bra025462.1-P	Field mustard	nucleus	68.43	69.69
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	63.84	69.13
PGSC0003DMT400024585	Potato	cytosol	59.11	68.99
AT5G45990.2	Thale cress	nucleus	65.23	68.67
Solyc03g007850.1.1	Tomato	mitochondrion	63.98	68.35
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	63.28	68.32
AT3G51110.1	Thale cress	cytosol	38.8	67.55
CDY16320	Canola	cytosol, mitochondrion	17.94	66.49
AT3G13210.1	Thale cress	nucleus	59.25	64.84
CDX89268	Canola	cytosol	11.27	64.29
CDY38549	Canola	extracellular	7.23	64.2
Bra038885.1-P	Field mustard	nucleus	28.23	63.84
CDX94039	Canola	nucleus	56.88	63.81
CDY49874	Canola	mitochondrion	12.66	63.64
CDY51192	Canola	cytosol	12.8	63.45
Bra031930.1-P	Field mustard	cytosol	58.55	63.12
CDY63724	Canola	plastid	57.02	62.79
CDY31331	Canola	cytosol, nucleus, plastid	56.19	62.64
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	34.35	58.12
PGSC0003DMT400016837	Potato	mitochondrion	20.86	57.69
CDY16319	Canola	nucleus	6.82	56.32
Solyc10g050500.1.1	Tomato	cytosol	5.29	55.07
PGSC0003DMT400015907	Potato	cytosol	13.77	54.7
CDY14715	Canola	cytosol	13.49	45.97
Bra023285.1-P	Field mustard	mitochondrion	9.74	42.68
CDX93820	Canola	cytosol	10.29	39.57
PGSC0003DMT400041076	Potato	nucleus	10.85	38.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS7A01G351600	EnsemblPlants:TraesCS7A01G351600.1	SEG:seg

Description

No Description!

Coordinates

chr7A:-:514921517..514925485

Molecular Weight (calculated)

85860.8 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.785

Length

719 amino acids

Sequence
(BLAST)

001: MALTTRGGGG ADQAQPPPVP DASLGFLTKR DTEVKLPRAT RVKNKTPAGV QITAEQILRE ARERQEPEIR PPKQKITDVH ELADYRLRER KRFEDLIRRV
101: RWSVSAWVKY AKWEEGQKDF ARARSVYERA LDVAHRDHTL WLKYAEFEMR NRYVNHARNV WDRAVSLLPR IDQLWYKYIH MEELLGAVAN ARQVFERWMG
201: WRPDIAGWNS YIKFELRYGE VERARAIYER FVAEHPRPDT FIRYAKFEMK RGEVERARRV YERAADLLVD DEDAEVLFVA FAEFEEKCRE VERARAIYKY
301: ALDRVPKGRA EDLYRKFLAF EKQFGDREGI EDAIVGKRRF QYEDEVRKNP LNYDSWFDYI RLEESVGNKD RIRDVYERSI ANVPPAEEKR YWQRYIYLWI
401: NYALYEELDA QDMERTREVY RECLKLIPHK KFTFAKLWLM AAQFEIRQKN IKAARQILGN AIGMAPKGKI FKKYIEIELY LGNFDRCRTL YEKYIEWSPA
501: NCYAWRKYAE LEKNLSETDR ARSIYELAIA QPALDTPEVL WKEYLQFEID EDEFDRAREL YERLLDRTKH LKVWISFAEF EASAGLGEDA ESEENKNDAG
601: YQEQQLERVR RCRAVFERAF DYFRTNAAEL KEERAMLLEE WLKKELSFGD LGDVTLVQKK APRKVKRKRP LPTDDGSNIA YEEYIDYIFP DEVTLAPNLK
701: ILEAAYKWKK QKANDTEDD

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.