Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35016 | Canola | nucleus | 89.65 | 92.8 |
| Bra028504.1-P | Field mustard | nucleus | 92.62 | 92.49 |
| Bra025462.1-P | Field mustard | nucleus | 92.34 | 92.21 |
| CDX67505 | Canola | nucleus | 87.23 | 92.2 |
| CDY49876 | Canola | nucleus | 87.23 | 92.2 |
| CDY27682 | Canola | nucleus | 86.95 | 91.9 |
| AT5G45990.2 | Thale cress | nucleus | 83.12 | 85.8 |
| AT3G13210.1 | Thale cress | nucleus | 78.16 | 83.87 |
| AT3G51110.1 | Thale cress | cytosol | 44.68 | 76.27 |
| EES19533 | Sorghum | cytosol | 71.91 | 70.42 |
| EER93674 | Sorghum | cytosol | 71.63 | 69.94 |
| TraesCS7D01G371400.1 | Wheat | cytosol | 70.35 | 68.98 |
| TraesCS7B01G276500.1 | Wheat | cytosol | 70.35 | 68.98 |
| TraesCS7A01G351600.1 | Wheat | nucleus | 70.35 | 68.98 |
| Os05t0289400-01 | Rice | nucleus | 70.5 | 68.74 |
| Zm00001d013548_P002 | Maize | mitochondrion | 57.87 | 67.55 |
| Zm00001d033388_P001 | Maize | cytosol | 71.49 | 64.95 |
| TraesCS5B01G277100.1 | Wheat | cytosol, mitochondrion | 50.92 | 63.54 |
| TraesCS5D01G284700.1 | Wheat | cytosol, mitochondrion | 62.55 | 63.36 |
| HORVU7Hr1G089610.1 | Barley | nucleus, plastid | 70.07 | 62.3 |
| HORVU5Hr1G075030.1 | Barley | nucleus | 61.13 | 60.03 |
| Os06t0523900-00 | Rice | cytosol, plastid | 58.3 | 58.8 |
| Os10t0328700-01 | Rice | mitochondrion | 40.28 | 39.94 |
| GSMUA_Achr5P12800_001 | Banana | nucleus | 5.82 | 20.5 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.6 | EntrezGene:834182 | ProteinID:AED94726.1 | ArrayExpress:AT5G41770 | EnsemblPlantsGene:AT5G41770 |
| RefSeq:AT5G41770 | TAIR:AT5G41770 | RefSeq:AT5G41770-TAIR-G | EnsemblPlants:AT5G41770.1 | TAIR:AT5G41770.1 | Unigene:At.9341 |
| ncoils:Coil | UniProt:F4JZX8 | GO:GO:0000245 | GO:GO:0000974 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071010 |
| GO:GO:0071011 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 | InterPro:HAT | InterPro:IPR011990 |
| InterPro:IPR013026 | RefSeq:NP_198992.2 | PFAM:PF02184 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50293 | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF3 |
| SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000196FF5 | SEG:seg |
Description
Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
Coordinates
chr5:+:16717946..16721222
Molecular Weight (calculated)
84531.9 Da
IEP (calculated)
5.820
GRAVY (calculated)
-0.823
Length
705 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.