Factsheet for Zm00001d033388_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93674	Sorghum	cytosol	90.34	97.09
Os05t0289400-01	Rice	nucleus	85.57	91.84
TraesCS7D01G371400.1	Wheat	cytosol	83.51	90.13
Zm00001d013548_P002	Maize	mitochondrion	70.1	90.07
TraesCS7B01G276500.1	Wheat	cytosol	83.38	89.99
TraesCS7A01G351600.1	Wheat	nucleus	82.99	89.57
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	60.57	83.19
HORVU7Hr1G089610.1	Barley	nucleus, plastid	83.25	81.46
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	72.94	81.32
GSMUA_Achr1P00740_001	Banana	cytosol	59.54	78.44
Os06t0523900-00	Rice	cytosol, plastid	69.97	77.68
HORVU5Hr1G075030.1	Barley	nucleus	70.75	76.46
KRH77629	Soybean	nucleus	67.53	75.4
KRH27855	Soybean	nucleus	67.53	75.4
VIT_02s0025g01160.t01	Wine grape	cytosol	67.91	74.96
Solyc12g056080.1.1	Tomato	nucleus	65.98	73.88
PGSC0003DMT400012873	Potato	cytosol	65.98	73.88
CDX67505	Canola	nucleus	61.6	71.66
CDY49876	Canola	nucleus	61.47	71.51
AT5G41770.1	Thale cress	nucleus	64.95	71.49
CDY35016	Canola	nucleus	62.63	71.37
Bra028504.1-P	Field mustard	nucleus	64.82	71.25
CDY27682	Canola	nucleus	61.21	71.21
Bra025462.1-P	Field mustard	nucleus	64.69	71.1
AT5G45990.2	Thale cress	nucleus	62.11	70.57
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	59.79	69.88
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	59.92	69.82
PGSC0003DMT400024585	Potato	cytosol	55.41	69.81
Solyc03g007850.1.1	Tomato	mitochondrion	59.92	69.09
CDY16320	Canola	cytosol, mitochondrion	17.01	68.04
AT3G51110.1	Thale cress	cytosol	35.95	67.55
AT3G13210.1	Thale cress	nucleus	56.31	66.51
CDX89268	Canola	cytosol	10.7	65.87
Bra038885.1-P	Field mustard	nucleus	26.8	65.41
Bra031930.1-P	Field mustard	cytosol	55.8	64.92
CDY63724	Canola	plastid	54.51	64.78
CDX94039	Canola	nucleus	53.48	64.74
CDY31331	Canola	cytosol, nucleus, plastid	53.74	64.65
CDY38549	Canola	extracellular	6.7	64.2
CDY51192	Canola	cytosol	11.86	63.45
CDY49874	Canola	mitochondrion	11.47	62.24
PGSC0003DMT400016837	Potato	mitochondrion	19.72	58.85
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	32.09	58.59
CDY16319	Canola	nucleus	6.44	57.47
PGSC0003DMT400015907	Potato	cytosol	13.02	55.8
Solyc10g050500.1.1	Tomato	cytosol	4.77	53.62
CDY14715	Canola	cytosol	12.63	46.45
Bra023285.1-P	Field mustard	mitochondrion	8.89	42.07
PGSC0003DMT400041076	Potato	nucleus	10.95	41.67
CDX93820	Canola	cytosol	9.41	39.04

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103643760	MapMan:16.4.5.2.6	UniProt:A0A1D6KYR8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	ProteinID:ONM07528.1	PFAM:PF02184	PFscan:PS50293
PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000842AAFC	EnsemblPlantsGene:Zm00001d033388	EnsemblPlants:Zm00001d033388_P001	EnsemblPlants:Zm00001d033388_T001	SEG:seg	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:261266394..261273985

Molecular Weight (calculated)

92351.7 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.736

Length

776 amino acids

Sequence
(BLAST)

001: MALTTRGGAG GGDPAKAPSA SDPSLGFLTK RDTEVKLPRA TRVKNKTPAP IQITAEQILR EARERQEPEI RPPKQKITDP HELSDYRLRK RKEFEDVIRR
101: VRWSVSAWVK YARWEEQQRD FARARSVYER ALDVAHRDHT LWLKYAEFEM RNRFVNHARN VWDRAVSLLP RVDQLWYKYI HMEELLGAVA NARQVFERWM
201: SWRPDTAGWN SYIKFELRYG EVERARAIYE RFVAEHPRPD TFIRYAKFEM KLGEVERARR VYERAADLLA DDEDAEVLFV AFAEFEERCR EVERARAIYK
301: YALDRVPKGR AEELYRKFLA FEKQFGDREG IEDAIVGKRR FQYEDEVRKN PLNYDSWFDY IRLEESVGNK DRIREVYERA IANVPPAEEK RYWQRYIYLW
401: INYALYEELD AQDRERTREV YKECLRLIPH KKFTFAKMWL MAAQFEIRQR NLKAARQILG NAIGMAPKGK IFKKYIEIEL YLGNFDRCRT LYEKYIEWSP
501: ANCYAWRKYA ELEKNLSETD RARSIYELAI AQPALDTPEV LWKPKFNSSL GIGSILIEHE SIESDNVLFR HEKLLVLNLI NTIFYIWMLT NSCPTLNSQE
601: YLQFEIDENE FERTRQLYER LLDRTKHLKV WISYAEFEAS AGLGGEDGED KEKKNEVSYQ EQQMERVQKC RAVFERAFDY FRTSAPELKE ERAMLLEEWL
701: NKEVNFGDLG DVSLVQKKAP RKVKRKRPIP TEDGSTIAYE EYIDYIFPDE VALAPNLKIL EAAYKWKKQK TGDGDE

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.