Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072653 | Potato | cytosol, mitochondrion, nucleus, plastid | 89.45 | 82.73 |
| PGSC0003DMT400012873 | Potato | cytosol | 88.47 | 78.64 |
| KRH27855 | Soybean | nucleus | 80.84 | 71.65 |
| KRH77629 | Soybean | nucleus | 80.68 | 71.51 |
| VIT_02s0025g01160.t01 | Wine grape | cytosol | 80.68 | 70.7 |
| PGSC0003DMT400015907 | Potato | cytosol | 19.97 | 67.96 |
| PGSC0003DMT400016837 | Potato | mitochondrion | 28.08 | 66.54 |
| EES19533 | Sorghum | cytosol | 69.64 | 59.58 |
| EER93674 | Sorghum | cytosol | 69.81 | 59.56 |
| TraesCS7A01G351600.1 | Wheat | nucleus | 68.99 | 59.11 |
| TraesCS7B01G276500.1 | Wheat | cytosol | 68.99 | 59.11 |
| TraesCS7D01G371400.1 | Wheat | cytosol | 68.99 | 59.11 |
| Os05t0289400-01 | Rice | nucleus | 68.18 | 58.09 |
| TraesCS5D01G284700.1 | Wheat | cytosol, mitochondrion | 64.12 | 56.75 |
| Zm00001d013548_P002 | Maize | mitochondrion | 54.87 | 55.96 |
| TraesCS5B01G277100.1 | Wheat | cytosol, mitochondrion | 50.97 | 55.58 |
| Zm00001d033388_P001 | Maize | cytosol | 69.81 | 55.41 |
| HORVU7Hr1G089610.1 | Barley | nucleus, plastid | 68.83 | 53.47 |
| HORVU5Hr1G075030.1 | Barley | nucleus | 61.36 | 52.65 |
| Os06t0523900-00 | Rice | cytosol, plastid | 57.31 | 50.5 |
| Bra023285.1-P | Field mustard | mitochondrion | 10.06 | 37.8 |
| PGSC0003DMT400041076 | Potato | nucleus | 12.18 | 36.76 |
| Os10t0328700-01 | Rice | mitochondrion | 40.26 | 34.88 |
| GSMUA_Achr5P12800_001 | Banana | nucleus | 6.01 | 18.5 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT | InterPro:IPR011990 |
| UniProt:M1AKD5 | PFAM:PF02184 | EnsemblPlantsGene:PGSC0003DMG400009506 | PGSC:PGSC0003DMG400009506 | EnsemblPlants:PGSC0003DMT400024585 | PANTHER:PTHR11246 |
| PANTHER:PTHR11246:SF3 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000295BB41 | SEG:seg |
Description
Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009506]
Coordinates
chr3:-:49680440..49682579
Molecular Weight (calculated)
74526.3 Da
IEP (calculated)
8.649
GRAVY (calculated)
-0.741
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGYLTRKE TEVKVAMARR VKNKTPAPIQ ITAEQILREA RERQEAEIRP PNQKITDQTE VADYRLRKRK EFESLISRVG WNKNVWVKYA EWEESQNDLK
101: RARSIWERAL GIDALNRDHT IWLKYVHMEM KNKFVNHARN LWDRAVIRLP RVDQLWYRYI HMEEMLGNVT GARGIFERWM GWMPDQQGWL SYIKFELRYN
201: EIERAREIFE RLVQCHPKVI AWIRFAKFEM KNGEIGRVRN CYERAVDKLA DDDEEAEQLF VAFAEFEEKC RETDRARCIY KFALDHIPKG RAEDLFSKFV
301: AFEKQYGDRE GIEDVIVGKM RFQYEDQVKK NPRNYDTWFD YIRLEERIGN KERIREVYER AIANVPPAEE KRYWQRYIYL WINYALYEEL DAQDMERAKH
401: VYRECLKLIP HHKFSFAKIW LLAAQFEIRQ LRLKEARLFL GEAIGRAPKD KIFKKYIEIE LHLGNIDRCR KLYEKYLEWS PENCYAWSKF AELERSLYET
501: ERARAVFELA IDQPALDIPE LLWKAYIDFE ISEGEFERTR ALYERLLNRT KHLNMENTFG ELPKKLKKRR QIDMEDGPAV YEEYIDYLFP EEMQANNLNI
601: LASAYKWKKQ RVASKD
101: RARSIWERAL GIDALNRDHT IWLKYVHMEM KNKFVNHARN LWDRAVIRLP RVDQLWYRYI HMEEMLGNVT GARGIFERWM GWMPDQQGWL SYIKFELRYN
201: EIERAREIFE RLVQCHPKVI AWIRFAKFEM KNGEIGRVRN CYERAVDKLA DDDEEAEQLF VAFAEFEEKC RETDRARCIY KFALDHIPKG RAEDLFSKFV
301: AFEKQYGDRE GIEDVIVGKM RFQYEDQVKK NPRNYDTWFD YIRLEERIGN KERIREVYER AIANVPPAEE KRYWQRYIYL WINYALYEEL DAQDMERAKH
401: VYRECLKLIP HHKFSFAKIW LLAAQFEIRQ LRLKEARLFL GEAIGRAPKD KIFKKYIEIE LHLGNIDRCR KLYEKYLEWS PENCYAWSKF AELERSLYET
501: ERARAVFELA IDQPALDIPE LLWKAYIDFE ISEGEFERTR ALYERLLNRT KHLNMENTFG ELPKKLKKRR QIDMEDGPAV YEEYIDYLFP EEMQANNLNI
601: LASAYKWKKQ RVASKD
001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
Arabidopsis Description
Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.