Factsheet for PGSC0003DMT400016837

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041076	Potato	nucleus	46.15	58.82
Solyc03g007850.1.1	Tomato	mitochondrion	86.54	33.43
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	82.31	32.13
PGSC0003DMT400012873	Potato	cytosol	82.69	31.02
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	78.46	30.72
PGSC0003DMT400024585	Potato	cytosol	66.54	28.08
VIT_02s0025g01160.t01	Wine grape	cytosol	71.92	26.6
KRH77629	Soybean	nucleus	69.23	25.9
KRH27855	Soybean	nucleus	68.85	25.76
Zm00001d013548_P002	Maize	mitochondrion	56.92	24.5
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	53.08	24.42
EES19533	Sorghum	cytosol	58.08	20.97
TraesCS7D01G371400.1	Wheat	cytosol	57.69	20.86
TraesCS7B01G276500.1	Wheat	cytosol	57.69	20.86
TraesCS7A01G351600.1	Wheat	nucleus	57.69	20.86
EER93674	Sorghum	cytosol	57.69	20.78
HORVU5Hr1G075030.1	Barley	nucleus	55.77	20.2
Os05t0289400-01	Rice	nucleus	56.15	20.19
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	53.08	19.83
Zm00001d033388_P001	Maize	cytosol	58.85	19.72
Os06t0523900-00	Rice	cytosol, plastid	52.69	19.6
HORVU7Hr1G089610.1	Barley	nucleus, plastid	57.31	18.79
Bra023285.1-P	Field mustard	mitochondrion	11.54	18.29
Os10t0328700-01	Rice	mitochondrion	39.23	14.35
GSMUA_Achr5P12800_001	Banana	nucleus	5.0	6.5
PGSC0003DMT400015907	Potato	cytosol	3.08	4.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400016837	EnsemblPlantsGene:PGSC0003DMG400006586	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	PGSC:PGSC0003DMG400006586	SEG:seg
SMART:SM00386	SUPFAM:SSF48452	UniParc:UPI000296BE4F	UniProt:M1A878	MapMan:35.2	:

Description

Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006586]

Coordinates

chr3:+:49217643..49218982

Molecular Weight (calculated)

30813.7 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.677

Length

260 amino acids

Sequence
(BLAST)

001: MKNREIGRAR NCYERAVDKL AVDDEEAEQL FVAFAEFEDK CRETDRARCI ALDHIPKGRA EDLYSKFVAF EKHKFAELER SLYETERARA VFELAIDQPA
101: LDIPELLWKA YIDFEISEGE FERTRALYKR LLNHTKHLKV WISYSVIDDS DIKQKKKCLQ HARDVFERAV SYLINSAPEL KEERVMLLEE WIYMESNFGD
201: ANLVRAKLPK KLKKRRQIET EDGPAAYEEY IHYLFPEQTT SMKLLDSAYK WKKQRVASKN

Best Arabidopsis Sequence Match ( AT3G13210.1 )
(BLAST)

001: MASGKDSDRN LGYMTRKDAE LKLPRMTQVK NKTPAPIQIT AEQILREARE RQEAEFRPPN QTITDSAELS DYRLRRRKEF EDQIRRARLN TQVWVKYADF
101: EMKNKSVNEA RNVWDRAVSL LPRVDQLWYK FIHMEEKLGN IAGARQILER WIHCSPDQQA WLCFIKFELK YNEIECARSI YERFVLCHPK VSAYIRYAKF
201: EMKHGQVELA MKVFERAKKE LADDEEAEIL FVAFAEFEEQ YKFALDQIPK GRAENLYSKF VAFEKQNGDK EGIEDAIIGK RRCQYEDEVR KNPLNYDSWF
301: DFVRLEETVG NKDRIREIYE RAVANVPPPE AQEKRYWQRY IYLWINYAFF AEMVTEDVES TRDVYRACLK LIPHSKFSFA KIWLLAAQHE IRQLNLTGAR
401: QILGNAIGKA PKDKIFKKYI EIELQLRNID RCRKLYERYL EWSPGNCYAW RKYAEFEMSL AETERTRAIF ELAISQPALD MPELLWKTYI DFEISEGELE
501: RTRALYERLL DRTKHCKVWV DFAKFEASAA EHKEDEEEED AIERKKDGIK RAREIFDRAN TYNKDSTPEL KEERAMLLED WLNMETGFGK LGDVRVVQSK
601: LPKKVKKRKL SSREDGCTEY EEYTDYLFPE ESETTSLKIL EAAHKWKKQK VKAGECV

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JC74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.