Factsheet for TraesCS5D01G284700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	71.98	88.67
TraesCS7D01G371400.1	Wheat	cytosol	85.63	82.89
HORVU5Hr1G075030.1	Barley	nucleus	84.05	81.48
EER93674	Sorghum	cytosol	81.18	78.25
EES19533	Sorghum	cytosol	80.89	78.19
Os05t0289400-01	Rice	nucleus	80.32	77.32
Zm00001d013548_P002	Maize	mitochondrion	65.37	75.33
Zm00001d033388_P001	Maize	cytosol	81.32	72.94
GSMUA_Achr1P00740_001	Banana	cytosol	58.91	69.61
Os06t0523900-00	Rice	cytosol, plastid	67.24	66.95
Solyc12g056080.1.1	Tomato	nucleus	65.52	65.8
PGSC0003DMT400012873	Potato	cytosol	65.52	65.8
VIT_02s0025g01160.t01	Wine grape	cytosol	65.95	65.29
KRH77629	Soybean	nucleus	65.09	65.18
KRH27855	Soybean	nucleus	65.09	65.18
PGSC0003DMT400024585	Potato	cytosol	56.75	64.12
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	60.34	63.25
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	60.2	62.91
Solyc03g007850.1.1	Tomato	mitochondrion	60.49	62.56
AT5G41770.1	Thale cress	nucleus	63.36	62.55
CDY49876	Canola	nucleus	59.91	62.52
AT5G45990.2	Thale cress	nucleus	61.35	62.52
CDY35016	Canola	nucleus	61.06	62.41
CDX67505	Canola	nucleus	59.77	62.37
Bra028504.1-P	Field mustard	nucleus	63.22	62.32
AT3G51110.1	Thale cress	cytosol	36.93	62.23
CDY27682	Canola	nucleus	59.63	62.22
Bra025462.1-P	Field mustard	nucleus	62.93	62.04
Bra038885.1-P	Field mustard	nucleus	27.16	59.43
AT3G13210.1	Thale cress	nucleus	55.89	59.21
CDX94039	Canola	nucleus	54.31	58.97
CDX89268	Canola	cytosol	10.63	58.73
CDY51192	Canola	cytosol	12.21	58.62
CDY16320	Canola	cytosol, mitochondrion	16.09	57.73
Bra031930.1-P	Field mustard	cytosol	55.03	57.42
CDY31331	Canola	cytosol, nucleus, plastid	52.87	57.05
CDY63724	Canola	plastid	53.45	56.97
CDY38549	Canola	extracellular	6.32	54.32
CDY49874	Canola	mitochondrion	11.06	53.85
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	32.47	53.18
PGSC0003DMT400016837	Potato	mitochondrion	19.83	53.08
CDY16319	Canola	nucleus	6.47	51.72
PGSC0003DMT400015907	Potato	cytosol	12.64	48.62
Solyc10g050500.1.1	Tomato	cytosol	4.74	47.83
CDY14715	Canola	cytosol	12.64	41.71
Bra023285.1-P	Field mustard	mitochondrion	9.34	39.63
PGSC0003DMT400041076	Potato	nucleus	11.21	38.24
CDX93820	Canola	cytosol	9.91	36.9

Protein Annotations

EnsemblPlants:TraesCS5D01G284700.1	EnsemblPlantsGene:TraesCS5D01G284700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	PFAM:PF02184	SEG:seg
SMART:SM00386	SUPFAM:SSF48452	MapMan:16.4.5.2.6	:	:	:

Description

No Description!

Coordinates

chr5D:-:385440867..385442988

Molecular Weight (calculated)

82485.6 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.719

Length

696 amino acids

Sequence
(BLAST)

001: MALTTRRGGG ADQPSLGFLT NRDTEVRLPR ATRVKNKAPA GVQITAEQIL REARELQEPE IRPPRQRITD ADELADYRLG ERKRFEGLVT RGGVAAWVKY
101: ARWEEGQGDL ARARSVYERA LDLDAARRDH ALWLKYAEFE MRSRCVNHAR NVWDRAVSLL PRVDQLWHNY IHMEELLGAV ANARWLFERW MGWRPDIAAW
201: NSYIKFELRY GEVERARAIY QRLVAEHPRP DTFIRYAKFE MEHGGTEQAR RVYERASELL VDDEDAELLF VAFAEFEENR PEVERVRAIY KYALDRVPKG
301: KADDLYRKFL AFEKRFGDRE GIEDAVVRKQ RFQYEDEVRK NPLNYDSWFD YIRLEESAGN KDRIRDVYER AIANVPPAQE KRYWQRYIYL WINYALYEEL
401: DAQDMERTRE VYRAYLKLIP HKKFTFAKLW LMAAQFEIRQ KNIKAARRIL GNAIEYIEIE LHIGNFDRCR TLYEKYIEWS PANCYAWRKY AELEKNLSEA
501: DRARSVYELG ITQPSLDTPE VLWKEYLQFE IDEGEFGRAR ELYERLLDRT KHLKVWISYA EFEASAGLAE DNGSEVNKND ACYQDQQIER VRMCRAVFER
601: AFDYFRTNAA ELKEERAMLL EEWLKKELGF GDLGDVALVQ KKAPRKVKRK RPLPTDDGSN VAYEEYVDYI FPDEVTPASN LKISAAAYKW KKQKAF

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.