Factsheet for Solyc10g050500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27855	Soybean	nucleus	65.22	6.47
KRH77629	Soybean	nucleus	65.22	6.47
Solyc12g056080.1.1	Tomato	nucleus	62.32	6.2
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	59.42	6.17
Zm00001d013548_P002	Maize	mitochondrion	53.62	6.13
VIT_02s0025g01160.t01	Wine grape	cytosol	62.32	6.12
Solyc03g007850.1.1	Tomato	mitochondrion	57.97	5.94
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	47.83	5.84
TraesCS7D01G371400.1	Wheat	cytosol	55.07	5.29
TraesCS7B01G276500.1	Wheat	cytosol	55.07	5.29
TraesCS7A01G351600.1	Wheat	nucleus	55.07	5.29
EES19533	Sorghum	cytosol	53.62	5.14
EER93674	Sorghum	cytosol	53.62	5.12
Os05t0289400-01	Rice	nucleus	53.62	5.12
HORVU7Hr1G089610.1	Barley	nucleus, plastid	55.07	4.79
Zm00001d033388_P001	Maize	cytosol	53.62	4.77
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	47.83	4.74
HORVU5Hr1G075030.1	Barley	nucleus	47.83	4.6
Os06t0523900-00	Rice	cytosol, plastid	44.93	4.43
Os10t0328700-01	Rice	mitochondrion	37.68	3.66
Bra023285.1-P	Field mustard	mitochondrion	7.25	3.05
GSMUA_Achr5P12800_001	Banana	nucleus	2.9	1.0
PGSC0003DMT400041076	Potato	nucleus	0.0	0.0
CDY16319	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0000245	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071011
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:IPR011990	UniProt:K4D0K5	PANTHER:PTHR11246
PANTHER:PTHR11246:SF3	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc10g050500.1	EnsemblPlants:Solyc10g050500.1.1	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276A3C3

Description

No Description!

Coordinates

chr10:+:49868482..49869479

Molecular Weight (calculated)

8552.4 Da

IEP (calculated)

8.438

GRAVY (calculated)

-0.354

Length

69 amino acids

Sequence
(BLAST)

1: MDLAVTFCPK IDQLLYKYIY MKEMMLNNVA GARQVFERWI TWTPAQKSWL FYIEFELRYN ETDKAREFR

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.