Factsheet for Zm00001d013548_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19533	Sorghum	cytosol	91.06	76.39
Os05t0289400-01	Rice	nucleus	87.58	73.17
TraesCS7D01G371400.1	Wheat	cytosol	84.6	71.07
TraesCS7B01G276500.1	Wheat	cytosol	84.6	71.07
TraesCS7A01G351600.1	Wheat	nucleus	84.44	70.93
Zm00001d033388_P001	Maize	cytosol	90.07	70.1
CDY16320	Canola	cytosol, mitochondrion	21.85	68.04
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	63.24	67.61
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	75.33	65.37
HORVU7Hr1G089610.1	Barley	nucleus, plastid	84.44	64.31
HORVU5Hr1G075030.1	Barley	nucleus	74.5	62.67
Bra038885.1-P	Field mustard	nucleus	32.95	62.58
KRH77629	Soybean	nucleus	69.37	60.29
KRH27855	Soybean	nucleus	69.37	60.29
Solyc12g056080.1.1	Tomato	nucleus	68.54	59.74
PGSC0003DMT400012873	Potato	cytosol	68.54	59.74
AT3G51110.1	Thale cress	cytosol	40.56	59.32
Os06t0523900-00	Rice	cytosol, plastid	68.54	59.23
VIT_02s0025g01160.t01	Wine grape	cytosol	68.71	59.03
GSMUA_Achr1P00740_001	Banana	cytosol	57.12	58.57
AT5G41770.1	Thale cress	nucleus	67.55	57.87
Bra025462.1-P	Field mustard	nucleus	67.22	57.51
Bra028504.1-P	Field mustard	nucleus	67.22	57.51
AT5G45990.2	Thale cress	nucleus	64.9	57.39
CDX67505	Canola	nucleus	63.24	57.27
CDY35016	Canola	nucleus	64.4	57.12
CDY49876	Canola	nucleus	63.08	57.12
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	62.91	57.06
CDY27682	Canola	nucleus	62.91	56.97
PGSC0003DMT400016837	Potato	mitochondrion	24.5	56.92
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	61.92	56.33
Solyc03g007850.1.1	Tomato	mitochondrion	62.42	56.02
PGSC0003DMT400015907	Potato	cytosol	16.56	55.25
PGSC0003DMT400024585	Potato	cytosol	55.96	54.87
AT3G13210.1	Thale cress	nucleus	58.61	53.88
Solyc10g050500.1.1	Tomato	cytosol	6.13	53.62
Bra031930.1-P	Field mustard	cytosol	57.28	51.87
CDY63724	Canola	plastid	55.63	51.45
CDX94039	Canola	nucleus	54.3	51.17
CDY31331	Canola	cytosol, nucleus, plastid	54.64	51.16
CDY16319	Canola	nucleus	6.79	47.13
CDY51192	Canola	cytosol	10.93	45.52
CDY38549	Canola	extracellular	5.63	41.98
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	29.47	41.88
Bra023285.1-P	Field mustard	mitochondrion	11.26	41.46
CDX89268	Canola	cytosol	8.44	40.48
CDY14715	Canola	cytosol	13.91	39.81
PGSC0003DMT400041076	Potato	nucleus	13.41	39.71
CDX93820	Canola	cytosol	11.92	38.5
CDY49874	Canola	mitochondrion	7.62	32.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	UniProt:A0A1D6GKJ7	ProteinID:AQK63855.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246
PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000844521A
EnsemblPlantsGene:Zm00001d013548	EnsemblPlants:Zm00001d013548_P002	EnsemblPlants:Zm00001d013548_T002	SEG:seg	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr5:+:14038138..14042700

Molecular Weight (calculated)

72745.8 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.877

Length

604 amino acids

Sequence
(BLAST)

001: MRRRRRPLPI PASAFSPSAT PRSSYPAPIQ ITAEQILREA RERQEPEIRP PKQKITDPQE LSEYRLRKRK EFEDVIRRVR WSVSAWVKYA RWEEQQLDFA
101: RARSVYERTL DVAHRDHTLW LKYAEFEMRN RFVNHARNVW DRAVSLLPRV DQLWYKYIHM EELLGAVANA RQVFERWMSW RPDTAGWNSY IKFELRYGEV
201: ERARAIYERF VAEHPRPDTF IRYAKFEMKR GEVERARRVY ERAADLLADD EDAEVLFVAF AEFEERCREV ERARAIYKYA LDRVPKGRAE ELYRKFLAFE
301: KQFGDREGIE DAIVGKRRFQ YEDEVRKNPL NYDSWFDYIR LEESVGNNDR IREVYERAIA NVPPCRSAEE KRYWQRTLYE KYIEWSPANC YAWRRYAELE
401: KNLSDTDRAR SIYELAIVQT ALDMPEILWK EYLQFEIDEN EFERTRQLYE RLLDRTKHLK VWTSYAEFEA SAGLGGEDSE GEEKKNDKEQ KMEQVKKCRA
501: IFERAFDYFR TSASELKEER AMLLEEWLNK EVIFGDLGDV TLVQKKAPRK VKRKRPIPTE DGSTIAYEEY IDYIFPDEVA LAPNLKILEA AYKWKKQRTD
601: DDNV

Best Arabidopsis Sequence Match ( AT5G45990.1 )
(BLAST)

001: MTGKDAEVKL PRTTRVKNKT PAPVQITAEQ ILREARERQE AEIRPPKQKI TDSTELSDYR LRRRKEFEDQ IRRARWNIQV WVKYAKWEES QMDYARARSV
101: WERALEGEYR NHTLWVKYAE FEMKNKFVNN ARNVWDRSVT LLPRVDQLWE KYIYMEEKLG NVTGARQIFE RWMNWSPDQK AWLCFIKFEL RYNEIERARS
201: IYERFVLCHP KVSAFIRYAK FEMKRGGQVK LAREVYERAV DKLANDEEAE ILFVSFAEFE ERCKEVERAR FIYKFALDHI RKGRAEELYK KFVAFEKQYG
301: DKEGIEDAIV GKKRFEYEDE VSKNPLNYDS WFDYVRLEES VGNKDRIREI YERAIANVPP AQEKRFWQRY IYLWINYALY EEIETKDVER TRDVYRECLK
401: LIPHTKFSFA KIWLLAAEYE IRQLNLTGAR QILGNAIGKA PKVKIFKKYI EMELKLVNID RCRKLYERFL EWSPENCYAW RNYAEFEISL AETERARAIF
501: ELAISQPALD MPELLWKTYI DFEISEGEFE KTRALYERLL DRTKHCKVWI SFAKFEASAS EHKEDGIKSA RVIFDRANTY YKDTTPELEE ERATLLEDWL
601: NMETGFGELG DVSVVQSKLP KKLKKRKMTS REDGSTEYEE YFDYLFPEES GTTNLKILEA AYKWKKLKGE ECV

Arabidopsis Description

crooked neck protein, putative / cell cycle protein, putative [Source:TAIR;Acc:AT5G45990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.