CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023285.1-P	Field mustard	mitochondrion	78.61	89.63
CDY14715	Canola	cytosol	27.81	24.64
CDY16320	Canola	cytosol, mitochondrion	21.39	20.62
CDY51192	Canola	cytosol	14.97	19.31
Zm00001d013548_P002	Maize	mitochondrion	38.5	11.92
CDY35016	Canola	nucleus	43.32	11.89
CDX67505	Canola	nucleus	42.25	11.84
CDY27682	Canola	nucleus	42.25	11.84
CDY49876	Canola	nucleus	41.71	11.69
KRH77629	Soybean	nucleus	41.18	11.08
KRH27855	Soybean	nucleus	41.18	11.08
VIT_02s0025g01160.t01	Wine grape	cytosol	40.11	10.67
TraesCS7D01G371400.1	Wheat	cytosol	39.57	10.29
TraesCS7B01G276500.1	Wheat	cytosol	39.57	10.29
TraesCS7A01G351600.1	Wheat	nucleus	39.57	10.29
EES19533	Sorghum	cytosol	39.04	10.14
EER93674	Sorghum	cytosol	39.04	10.11
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	30.48	10.09
Os05t0289400-01	Rice	nucleus	38.5	9.96
CDY63724	Canola	plastid	34.76	9.95
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	36.9	9.91
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	22.46	9.88
CDX94039	Canola	nucleus	33.16	9.67
CDY31331	Canola	cytosol, nucleus, plastid	33.16	9.61
Os06t0523900-00	Rice	cytosol, plastid	35.83	9.59
Zm00001d033388_P001	Maize	cytosol	39.04	9.41
HORVU7Hr1G089610.1	Barley	nucleus, plastid	39.57	9.33
HORVU5Hr1G075030.1	Barley	nucleus	35.83	9.33
CDY16319	Canola	nucleus	3.74	8.05
Os10t0328700-01	Rice	mitochondrion	28.88	7.59
GSMUA_Achr5P12800_001	Banana	nucleus	7.49	7.0
CDY49874	Canola	mitochondrion	2.14	2.8
CDX89268	Canola	cytosol	1.6	2.38
CDY38549	Canola	extracellular	0.53	1.23

Protein Annotations

EnsemblPlants:CDX93820	EnsemblPlantsGene:GSBRNA2T00156598001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	ProteinID:CDX93820
ProteinID:CDX93820.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EEF272	MapMan:35.2	:

Description

BnaA09g24200D

Coordinates

chrLK031877:-:1194445..1195258

Molecular Weight (calculated)

21436.2 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.320

Length

187 amino acids

Sequence
(BLAST)

001: MCVNLLRGSV YTDIKRARYG GFGPFHKATG LESFISAVAS SATNDANDAF SVVVSLSLLE LPPTQAVEFL HFSDSSSSSF KHWPVPESPS WSEHLTSRYM
101: YKRATKKLAE AETLLVAFTE AEDLYKKFVA FEKQYGDKEE TEDATAGKRR FQYEDEVRKN TLNYDSWFDY VTLIILRIRR LIWVWCG

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.