CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19533	Sorghum	cytosol	97.09	97.36
Os05t0289400-01	Rice	nucleus	92.24	92.12
TraesCS7D01G371400.1	Wheat	cytosol	90.03	90.4
Zm00001d033388_P001	Maize	cytosol	97.09	90.34
TraesCS7B01G276500.1	Wheat	cytosol	89.89	90.26
TraesCS7A01G351600.1	Wheat	nucleus	89.61	89.99
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	64.96	83.01
HORVU7Hr1G089610.1	Barley	nucleus, plastid	89.89	81.84
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	78.25	81.18
GSMUA_Achr1P00740_001	Banana	cytosol	63.99	78.44
Os06t0523900-00	Rice	cytosol, plastid	75.21	77.68
HORVU5Hr1G075030.1	Barley	nucleus	75.9	76.32
KRH77629	Soybean	nucleus	72.71	75.54
KRH27855	Soybean	nucleus	72.71	75.54
VIT_02s0025g01160.t01	Wine grape	cytosol	72.58	74.54
Solyc12g056080.1.1	Tomato	nucleus	70.78	73.74
PGSC0003DMT400012873	Potato	cytosol	70.78	73.74
CDX67505	Canola	nucleus	66.2	71.66
AT5G41770.1	Thale cress	nucleus	69.94	71.63
CDY49876	Canola	nucleus	66.07	71.51
CDY35016	Canola	nucleus	67.31	71.37
Bra028504.1-P	Field mustard	nucleus	69.67	71.25
CDY27682	Canola	nucleus	65.79	71.21
Bra025462.1-P	Field mustard	nucleus	69.53	71.1
AT5G45990.2	Thale cress	nucleus	66.76	70.57
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	64.27	69.88
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	64.4	69.82
PGSC0003DMT400024585	Potato	cytosol	59.56	69.81
Solyc03g007850.1.1	Tomato	mitochondrion	64.4	69.09
AT3G51110.1	Thale cress	cytosol	38.64	67.55
CDY16320	Canola	cytosol, mitochondrion	18.14	67.53
AT3G13210.1	Thale cress	nucleus	60.66	66.67
CDX89268	Canola	cytosol	11.5	65.87
Bra038885.1-P	Field mustard	nucleus	28.67	65.09
Bra031930.1-P	Field mustard	cytosol	59.97	64.92
CDX94039	Canola	nucleus	57.62	64.9
CDY31331	Canola	cytosol, nucleus, plastid	57.76	64.65
CDY63724	Canola	plastid	58.31	64.47
CDY38549	Canola	extracellular	7.2	64.2
CDY51192	Canola	cytosol	12.74	63.45
CDY49874	Canola	mitochondrion	12.33	62.24
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	34.76	59.06
PGSC0003DMT400016837	Potato	mitochondrion	20.78	57.69
CDY16319	Canola	nucleus	6.93	57.47
PGSC0003DMT400015907	Potato	cytosol	13.99	55.8
Solyc10g050500.1.1	Tomato	cytosol	5.12	53.62
CDY14715	Canola	cytosol	13.57	46.45
Bra023285.1-P	Field mustard	mitochondrion	9.56	42.07
PGSC0003DMT400041076	Potato	nucleus	11.63	41.18
CDX93820	Canola	cytosol	10.11	39.04

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	EntrezGene:8054178	UniProt:C5WPP1	EnsemblPlants:EER93674	ProteinID:EER93674
ProteinID:EER93674.1	GO:GO:0000245	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071011
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	EnsemblPlantsGene:SORBI_3001G138400
SUPFAM:SSF48452	unigene:Sbi.9727	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A82A14	RefSeq:XP_002466676.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:10986848..10992292

Molecular Weight (calculated)

86119.1 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.808

Length

722 amino acids

Sequence
(BLAST)

001: MALTTRGGAG AGGGDPAKAP SASDPSLGFL TKRDTEVKLP RATRVKNKTP APIQITAEQI LREARERQEP EIRPPKQKIT DPHELSDYRL RKRKEFEDVI
101: RRVRWSVSAW VKYARWEEQQ RDFARARSVY ERALDVAHRD HTLWLKYAEF EMRNRFVNHA RNVWDRAVSL LPRVDQLWYK YIHMEELLGA VANARQVFER
201: WMSWRPDTAG WNSYIKFELR YGEVERARAI YERFVAEHPR PDTFIRYAKF EMKRGEVERA RRVYERAADL LADDEDAEVL FVAFAEFEER CREVERARAM
301: YKYALDRVPK GRAEELYRKF LAFEKQFGDR EGIEDAIVGK RRFQYEDEVR KNPLNYDSWF DYIRLEESVG NKDRIREVYE RAIANVPPAE EKRYWQRYIY
401: LWINYALYEE LDAQDMERTR EVYKECLRLI PHKKFTFAKM WLMAAQFEIR QKNLKAARQI LGNAIGMAPK GKIFKKYIEI ELYLGNFDRC RTLYEKYIEW
501: SPANCYAWRK YAELEKNLSE TDRARSIYEL AIAQPALDTP EVLWKEYLQF EIDENEFERT RQLYERLLDR TKHLKVWISY AEFEASAGLG SEDSEGEEKK
601: NEVGYQEQQM ERVQKCRAIF ERAFDYFRTS APELKEERAM LLEEWLNKEV SFGDLGDVSL VQKKAPRKVK RKRPIPTEDG STIAYEEYID YIFPDEVALA
701: PNLKILEAAY KWKKQKTGDD DE

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.