Factsheet for Os06t0523900-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0289400-01	Rice	nucleus	78.97	76.35
EES19533	Sorghum	cytosol	78.11	75.83
EER93674	Sorghum	cytosol	77.68	75.21
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	60.23	74.51
TraesCS7D01G371400.1	Wheat	cytosol	75.25	73.16
TraesCS7B01G276500.1	Wheat	cytosol	75.11	73.02
TraesCS7A01G351600.1	Wheat	nucleus	74.82	72.74
Zm00001d033388_P001	Maize	cytosol	77.68	69.97
Zm00001d013548_P002	Maize	mitochondrion	59.23	68.54
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	66.95	67.24
HORVU7Hr1G089610.1	Barley	nucleus, plastid	74.96	66.08
CDX89268	Canola	cytosol	11.87	65.87
GSMUA_Achr1P00740_001	Banana	cytosol	54.08	64.18
HORVU5Hr1G075030.1	Barley	nucleus	65.52	63.79
CDY38549	Canola	extracellular	7.3	62.96
CDY49876	Canola	nucleus	59.23	62.07
CDY27682	Canola	nucleus	58.94	61.77
CDY49874	Canola	mitochondrion	12.59	61.54
CDX67505	Canola	nucleus	58.66	61.47
CDY51192	Canola	cytosol	12.59	60.69
CDY35016	Canola	nucleus	59.08	60.65
KRH27855	Soybean	nucleus	60.09	60.43
KRH77629	Soybean	nucleus	59.94	60.29
VIT_02s0025g01160.t01	Wine grape	cytosol	60.23	59.89
Solyc12g056080.1.1	Tomato	nucleus	59.23	59.74
PGSC0003DMT400012873	Potato	cytosol	59.23	59.74
Bra025462.1-P	Field mustard	nucleus	59.66	59.07
Bra028504.1-P	Field mustard	nucleus	59.37	58.78
AT5G41770.1	Thale cress	nucleus	58.8	58.3
PGSC0003DMT400024585	Potato	cytosol	50.5	57.31
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	54.08	56.93
AT5G45990.2	Thale cress	nucleus	55.51	56.81
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	34.48	56.71
AT3G13210.1	Thale cress	nucleus	52.93	56.32
Solyc03g007850.1.1	Tomato	mitochondrion	54.22	56.31
CDY16320	Canola	cytosol, mitochondrion	15.59	56.19
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	53.22	55.86
CDX94039	Canola	nucleus	49.21	53.67
CDY63724	Canola	plastid	49.93	53.45
Bra031930.1-P	Field mustard	cytosol	50.93	53.37
CDY31331	Canola	cytosol, nucleus, plastid	48.93	53.02
PGSC0003DMT400016837	Potato	mitochondrion	19.6	52.69
AT3G51110.1	Thale cress	cytosol	31.04	52.54
Bra038885.1-P	Field mustard	nucleus	21.17	46.54
CDY14715	Canola	cytosol	13.73	45.5
Solyc10g050500.1.1	Tomato	cytosol	4.43	44.93
Bra023285.1-P	Field mustard	mitochondrion	9.44	40.24
CDY16319	Canola	nucleus	5.01	40.23
Os10t0328700-01	Rice	mitochondrion	39.63	38.96
PGSC0003DMT400015907	Potato	cytosol	9.59	37.02
CDX93820	Canola	cytosol	9.59	35.83
PGSC0003DMT400041076	Potato	nucleus	9.73	33.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	ProteinID:BAH93553.1	ProteinID:BAS98023.1	UniProt:C7J4B5	GO:GO:0000245
GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071011	GO:GO:0071012	GO:GO:0071013
GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	EnsemblPlantsGene:Os06g0523900	EnsemblPlants:Os06t0523900-00	PFAM:PF02184
PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B66639
SEG:seg	:	:	:	:	:

Description

RNA-processing protein, HAT helix domain containing protein. (Os06t0523900-00)

Coordinates

chr6:+:19357232..19360499

Molecular Weight (calculated)

80653.3 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.689

Length

699 amino acids

Sequence
(BLAST)

001: MALAIRAAAA AAGDMAPSSA SDPTLGFLTK RDTEVKLPRA TRVKNKTPAS VQITAEQILR EARSGRSPRS VPPSRRSPTP SSSPSTASAA ARSSRTPSAA
101: PGGTSARGSS TPGGRSGRGT SPARAPSTSA PSTSPTATTR SGVAWICRVR DAESAYEPND QLWYKYIHME QVLGAVANAR KVFELWMAWR PDAAGWNSYI
201: KFELRYGEIE RVRAIFERFV AEHPQPHTFI LYAKFEMKRG EVERARRVYE RAADLLADDE HAEVLFVAFA EFEERCREVE RARAVYKYAL DRVPKGQAEE
301: LYRKFLAFEK QFGDREGIED AIVGKRRFQY EDEVRKNPLN YDSWFDYIRL EESVGNKDRI REVYERAIAN IPPAEEKRYW QRYIYLWINY ALYEELDAKD
401: MERTREVYSE CLKLIPHKKL TFSKMWLMAA QFEIRQKNLK AARRILGNAI GMAPKGKIFK KYIEIELYLG NFERCRTLYE KYIEWSPANC YAWMKYAELE
501: KSLGETDRAR SIYELAIAQS ALDTPEVLWK EYLQFEIDKN EFHRTCELYE RLLDRTKDLK ASVGLGGEDS QSEEIKNEVS YQQQQIEQVR RCRAVFERAF
601: EYFRTSAPEL KEERAMLLEE WLNKEVSFGH LGDVTLVQKK APRKVKRKRP DPSEDGSTTA YEEYMDYIFP DEVALAPNLK ILEAAYKWKK QKTDDTDDD

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.