CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038885.1-P	Field mustard	nucleus	96.39	58.8
AT3G51110.1	Thale cress	cytosol	72.68	34.14
Zm00001d013548_P002	Maize	mitochondrion	68.04	21.85
CDX67505	Canola	nucleus	74.74	21.74
CDY27682	Canola	nucleus	74.74	21.74
CDY49876	Canola	nucleus	74.23	21.59
CDX93820	Canola	cytosol	20.62	21.39
CDY35016	Canola	nucleus	74.74	21.29
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	60.31	20.71
EES19533	Sorghum	cytosol	68.04	18.33
EER93674	Sorghum	cytosol	67.53	18.14
TraesCS7D01G371400.1	Wheat	cytosol	66.49	17.94
TraesCS7B01G276500.1	Wheat	cytosol	66.49	17.94
TraesCS7A01G351600.1	Wheat	nucleus	66.49	17.94
Os05t0289400-01	Rice	nucleus	66.49	17.84
CDY63724	Canola	plastid	59.79	17.76
Zm00001d033388_P001	Maize	cytosol	68.04	17.01
HORVU5Hr1G075030.1	Barley	nucleus	62.37	16.85
HORVU7Hr1G089610.1	Barley	nucleus, plastid	66.49	16.27
CDX94039	Canola	nucleus	53.61	16.22
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	57.73	16.09
Os06t0523900-00	Rice	cytosol, plastid	56.19	15.59
CDY31331	Canola	cytosol, nucleus, plastid	49.48	14.88
CDY51192	Canola	cytosol	9.28	12.41
Os10t0328700-01	Rice	mitochondrion	43.81	11.96
CDY14715	Canola	cytosol	11.34	10.43
GSMUA_Achr5P12800_001	Banana	nucleus	10.31	10.0
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	14.43	6.59
CDY49874	Canola	mitochondrion	2.06	2.8
CDY16319	Canola	nucleus	1.03	2.3
CDY38549	Canola	extracellular	0.0	0.0
CDX89268	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:A0A078FPC9	UniProt:A0A078FPC9	EnsemblPlants:CDY16320	ProteinID:CDY16320
ProteinID:CDY16320.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00090833001	InterPro:HAT
InterPro:IPR011990	PFAM:PF02184	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF4AE9	:	:	:	:

Description

BnaC01g23550DBnaC01g23550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPC9]

Coordinates

chrLK032062:+:712852..713436

Molecular Weight (calculated)

23326.7 Da

IEP (calculated)

7.045

GRAVY (calculated)

-0.606

Length

194 amino acids

Sequence
(BLAST)

001: MKNKFVNSAR HVWDRAVYLL PRVDQLWYKY SHMEEMLGNI AGARQIFERW MNWSPDQQGW LSFAKFELRY NETERARSIY ERFFLCHPKA SSFIRYAEFE
101: VKCGEVSRAR DVYERAMEKL EGDYEEAEML YLAFAEFEQG CNEFQRARVI YKFALDHIPI GRAEELYTRF IAFEKQHGDK QGIEDAIVGR RRTL

Best Arabidopsis Sequence Match ( AT3G13210.1 )
(BLAST)

001: MASGKDSDRN LGYMTRKDAE LKLPRMTQVK NKTPAPIQIT AEQILREARE RQEAEFRPPN QTITDSAELS DYRLRRRKEF EDQIRRARLN TQVWVKYADF
101: EMKNKSVNEA RNVWDRAVSL LPRVDQLWYK FIHMEEKLGN IAGARQILER WIHCSPDQQA WLCFIKFELK YNEIECARSI YERFVLCHPK VSAYIRYAKF
201: EMKHGQVELA MKVFERAKKE LADDEEAEIL FVAFAEFEEQ YKFALDQIPK GRAENLYSKF VAFEKQNGDK EGIEDAIIGK RRCQYEDEVR KNPLNYDSWF
301: DFVRLEETVG NKDRIREIYE RAVANVPPPE AQEKRYWQRY IYLWINYAFF AEMVTEDVES TRDVYRACLK LIPHSKFSFA KIWLLAAQHE IRQLNLTGAR
401: QILGNAIGKA PKDKIFKKYI EIELQLRNID RCRKLYERYL EWSPGNCYAW RKYAEFEMSL AETERTRAIF ELAISQPALD MPELLWKTYI DFEISEGELE
501: RTRALYERLL DRTKHCKVWV DFAKFEASAA EHKEDEEEED AIERKKDGIK RAREIFDRAN TYNKDSTPEL KEERAMLLED WLNMETGFGK LGDVRVVQSK
601: LPKKVKKRKL SSREDGCTEY EEYTDYLFPE ESETTSLKIL EAAHKWKKQK VKAGECV

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JC74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.