CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89268	Canola	cytosol	77.78	50.0
CDY49874	Canola	mitochondrion	77.78	44.06
CDY51192	Canola	cytosol	69.14	38.62
CDY14715	Canola	cytosol	48.15	18.48
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	65.43	12.47
CDX67505	Canola	nucleus	79.01	9.6
CDY27682	Canola	nucleus	79.01	9.6
CDY49876	Canola	nucleus	79.01	9.6
CDY35016	Canola	nucleus	79.01	9.4
CDX94039	Canola	nucleus	65.43	8.27
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	55.56	7.96
CDY31331	Canola	cytosol, nucleus, plastid	62.96	7.91
Os06t0523900-00	Rice	cytosol, plastid	62.96	7.3
TraesCS7A01G351600.1	Wheat	nucleus	64.2	7.23
TraesCS7B01G276500.1	Wheat	cytosol	64.2	7.23
TraesCS7D01G371400.1	Wheat	cytosol	64.2	7.23
EES19533	Sorghum	cytosol	64.2	7.22
EER93674	Sorghum	cytosol	64.2	7.2
CDY63724	Canola	plastid	58.02	7.2
Os05t0289400-01	Rice	nucleus	64.2	7.19
Zm00001d033388_P001	Maize	cytosol	64.2	6.7
HORVU5Hr1G075030.1	Barley	nucleus	59.26	6.69
HORVU7Hr1G089610.1	Barley	nucleus, plastid	64.2	6.56
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	54.32	6.32
Zm00001d013548_P002	Maize	mitochondrion	41.98	5.63
Os10t0328700-01	Rice	mitochondrion	43.21	4.92
CDX93820	Canola	cytosol	1.23	0.53
GSMUA_Achr5P12800_001	Banana	nucleus	0.0	0.0
CDY16320	Canola	cytosol, mitochondrion	0.0	0.0
CDY16319	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:A0A078HMI4	UniProt:A0A078HMI4	EnsemblPlants:CDY38549	ProteinID:CDY38549
ProteinID:CDY38549.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00066211001	InterPro:HAT	InterPro:IPR011990
PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDCA45

Description

BnaA05g12780DBnaA05g12780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMI4]

Coordinates

chrLK032426:-:39469..40315

Molecular Weight (calculated)

9895.0 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.109

Length

81 amino acids

Sequence
(BLAST)

1: MYLFLVIFFF RKQIFKNYIE IELQLGNIDR CRKLYELYLE WSPENCYAWS KYAELERSLA ETERSRVIFE LAISQPALDM P

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.