Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16320 | Canola | cytosol, mitochondrion | 10.0 | 10.31 |
| AT3G51110.1 | Thale cress | cytosol | 18.5 | 8.96 |
| Bra038885.1-P | Field mustard | nucleus | 14.0 | 8.81 |
| Bra023285.1-P | Field mustard | mitochondrion | 6.5 | 7.93 |
| CDX93820 | Canola | cytosol | 7.0 | 7.49 |
| CDY16319 | Canola | nucleus | 3.0 | 6.9 |
| GSMUA_Achr1P00740_001 | Banana | cytosol | 20.0 | 6.79 |
| KRH77629 | Soybean | nucleus | 23.5 | 6.76 |
| KRH27855 | Soybean | nucleus | 23.5 | 6.76 |
| Bra025462.1-P | Field mustard | nucleus | 22.5 | 6.37 |
| Bra028504.1-P | Field mustard | nucleus | 22.5 | 6.37 |
| Solyc12g056080.1.1 | Tomato | nucleus | 21.5 | 6.2 |
| CDY35016 | Canola | nucleus | 21.0 | 6.17 |
| CDY27682 | Canola | nucleus | 20.5 | 6.15 |
| CDY49876 | Canola | nucleus | 20.5 | 6.15 |
| CDX67505 | Canola | nucleus | 20.5 | 6.15 |
| VIT_02s0025g01160.t01 | Wine grape | cytosol | 21.5 | 6.12 |
| PGSC0003DMT400012873 | Potato | cytosol | 21.0 | 6.06 |
| PGSC0003DMT400024585 | Potato | cytosol | 18.5 | 6.01 |
| AT5G41770.1 | Thale cress | nucleus | 20.5 | 5.82 |
| Solyc03g007560.2.1 | Tomato | cytosol, mitochondrion | 19.0 | 5.72 |
| AT5G45990.2 | Thale cress | nucleus | 19.5 | 5.71 |
| Solyc03g007850.1.1 | Tomato | mitochondrion | 19.0 | 5.65 |
| AT3G13210.1 | Thale cress | nucleus | 17.5 | 5.33 |
| PGSC0003DMT400072653 | Potato | cytosol, mitochondrion, nucleus, plastid | 17.5 | 5.26 |
| CDY63724 | Canola | plastid | 17.0 | 5.21 |
| CDX98687 | Canola | endoplasmic reticulum, nucleus, plastid | 11.0 | 5.18 |
| Bra031930.1-P | Field mustard | cytosol | 17.0 | 5.1 |
| PGSC0003DMT400016837 | Potato | mitochondrion | 6.5 | 5.0 |
| CDY31331 | Canola | cytosol, nucleus, plastid | 15.5 | 4.81 |
| CDX89268 | Canola | cytosol | 3.0 | 4.76 |
| CDY14715 | Canola | cytosol | 4.5 | 4.27 |
| PGSC0003DMT400015907 | Potato | cytosol | 3.5 | 3.87 |
| CDX94039 | Canola | nucleus | 12.0 | 3.74 |
| CDY51192 | Canola | cytosol | 2.5 | 3.45 |
| Solyc10g050500.1.1 | Tomato | cytosol | 1.0 | 2.9 |
| PGSC0003DMT400041076 | Potato | nucleus | 1.0 | 0.98 |
| CDY49874 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY38549 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P12800_001 | EnsemblPlants:GSMUA_Achr5T12800_001 | EnsemblPlantsGene:GSMUA_Achr5G12800_001 | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF3 | SEG:seg |
| UniParc:UPI000294978C | UniProt:M0SY09 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G12800_001]
Coordinates
chr5:-:9152805..9155017
Molecular Weight (calculated)
21848.5 Da
IEP (calculated)
7.668
GRAVY (calculated)
-0.760
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTASDPS MGIPDEAGHG GEAAPADLSK EQEPGAHPDH RRADPVRGHG AARTRDPPPE EESPTSTSST TTASSTARSS RTLSVAPAGT PAPGSSTKRE
101: MRHISSNHPL TMYRKYIAFD MQLGDGWGLR MPLSKRGESD CQRASGGGEK QFWQRYIYLC SAILIILHEE LDAQDIDRSR EVYRECLKLI PHKKFSFAKL
101: MRHISSNHPL TMYRKYIAFD MQLGDGWGLR MPLSKRGESD CQRASGGGEK QFWQRYIYLC SAILIILHEE LDAQDIDRSR EVYRECLKLI PHKKFSFAKL
001: MTGKDAEVKL PRTTRVKNKT PAPVQITAEQ ILREARERQE AEIRPPKQKI TDSTELSDYR LRRRKEFEDQ IRRARWNIQV WVKYAKWEES QMDYARARSV
101: WERALEGEYR NHTLWVKYAE FEMKNKFVNN ARNVWDRSVT LLPRVDQLWE KYIYMEEKLG NVTGARQIFE RWMNWSPDQK AWLCFIKFEL RYNEIERARS
201: IYERFVLCHP KVSAFIRYAK FEMKRGGQVK LAREVYERAV DKLANDEEAE ILFVSFAEFE ERCKEVERAR FIYKFALDHI RKGRAEELYK KFVAFEKQYG
301: DKEGIEDAIV GKKRFEYEDE VSKNPLNYDS WFDYVRLEES VGNKDRIREI YERAIANVPP AQEKRFWQRY IYLWINYALY EEIETKDVER TRDVYRECLK
401: LIPHTKFSFA KIWLLAAEYE IRQLNLTGAR QILGNAIGKA PKVKIFKKYI EMELKLVNID RCRKLYERFL EWSPENCYAW RNYAEFEISL AETERARAIF
501: ELAISQPALD MPELLWKTYI DFEISEGEFE KTRALYERLL DRTKHCKVWI SFAKFEASAS EHKEDGIKSA RVIFDRANTY YKDTTPELEE ERATLLEDWL
601: NMETGFGELG DVSVVQSKLP KKLKKRKMTS REDGSTEYEE YFDYLFPEES GTTNLKILEA AYKWKKLKGE ECV
101: WERALEGEYR NHTLWVKYAE FEMKNKFVNN ARNVWDRSVT LLPRVDQLWE KYIYMEEKLG NVTGARQIFE RWMNWSPDQK AWLCFIKFEL RYNEIERARS
201: IYERFVLCHP KVSAFIRYAK FEMKRGGQVK LAREVYERAV DKLANDEEAE ILFVSFAEFE ERCKEVERAR FIYKFALDHI RKGRAEELYK KFVAFEKQYG
301: DKEGIEDAIV GKKRFEYEDE VSKNPLNYDS WFDYVRLEES VGNKDRIREI YERAIANVPP AQEKRFWQRY IYLWINYALY EEIETKDVER TRDVYRECLK
401: LIPHTKFSFA KIWLLAAEYE IRQLNLTGAR QILGNAIGKA PKVKIFKKYI EMELKLVNID RCRKLYERFL EWSPENCYAW RNYAEFEISL AETERARAIF
501: ELAISQPALD MPELLWKTYI DFEISEGEFE KTRALYERLL DRTKHCKVWI SFAKFEASAS EHKEDGIKSA RVIFDRANTY YKDTTPELEE ERATLLEDWL
601: NMETGFGELG DVSVVQSKLP KKLKKRKMTS REDGSTEYEE YFDYLFPEES GTTNLKILEA AYKWKKLKGE ECV
Arabidopsis Description
crooked neck protein, putative / cell cycle protein, putative [Source:TAIR;Acc:AT5G45990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.