Factsheet for Bra038885.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16320	Canola	cytosol, mitochondrion	58.8	96.39
AT3G51110.1	Thale cress	cytosol	65.72	50.61
Bra028504.1-P	Field mustard	nucleus	73.9	33.29
Zm00001d013548_P002	Maize	mitochondrion	62.58	32.95
Bra025462.1-P	Field mustard	nucleus	72.96	32.86
Bra023285.1-P	Field mustard	mitochondrion	16.67	32.32
Bra031930.1-P	Field mustard	cytosol	64.15	30.58
EES19533	Sorghum	cytosol	65.09	28.75
EER93674	Sorghum	cytosol	65.09	28.67
Os05t0289400-01	Rice	nucleus	64.78	28.49
TraesCS7D01G371400.1	Wheat	cytosol	63.84	28.23
TraesCS7B01G276500.1	Wheat	cytosol	63.84	28.23
TraesCS7A01G351600.1	Wheat	nucleus	63.84	28.23
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	59.43	27.16
Zm00001d033388_P001	Maize	cytosol	65.41	26.8
HORVU7Hr1G089610.1	Barley	nucleus, plastid	63.84	25.6
HORVU5Hr1G075030.1	Barley	nucleus	55.66	24.65
Os06t0523900-00	Rice	cytosol, plastid	46.54	21.17
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	37.11	20.89
Os10t0328700-01	Rice	mitochondrion	45.28	20.25
GSMUA_Achr5P12800_001	Banana	nucleus	8.81	14.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	EnsemblPlantsGene:Bra038885	EnsemblPlants:Bra038885.1	EnsemblPlants:Bra038885.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:M4FCR6
PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025453C1	SEG:seg	:	:

Description

AT5G41770 (E=9e-131) | crooked neck protein, putative / cell cycle protein, putative

Coordinates

chrA01:-:12761433..12762389

Molecular Weight (calculated)

37846.4 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.881

Length

318 amino acids

Sequence
(BLAST)

001: MVSVCEKDSN LPRPTRVKNK SPAAGQITAE QLLREARERQ EPEVLPSEHS ITDSTELSDY SLRRRKEFED RVSRGGRSDV QVWVNYARWE ESQKDYARAR
101: SVWERALKDH HRNHALWVKY AESEMKNKFV NSARNVWDRA VYLLPRVDQL WYKYSHMEEM LGNIAGARQI FERWMNWSPD QQGWLSFANF ELRYNETERA
201: RSIYERLFRC HPKASSFIRY AEFEVKCGEV SRARDVYERA TEKLEGDYEE AEMLYLAFAE FEQGCNEFQR ARVIYKFALD HIPKGKAEEL YTRFIAFEKQ
301: HGDKQGIEDA IVGRRRTL

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.